SNP Detail Info-rs3809404

Organism: Homo sapiens

Alleles: A>C / A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0366 (10955/29914,GnomAD)
G=0275 (1376/5008,1000G)
G=0438 (1688/3854,ALSPAC)
G=0430 (1593/3708,TWINSUK)

Position: chr14:100889673 (GRCh38.p7) (14q32.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.679	G=0.321
1000Genomes	American	Sub	694	A=0.710	G=0.290
1000Genomes	East Asian	Sub	1008	A=0.924	G=0.076
1000Genomes	Europe	Sub	1006	A=0.552	G=0.448
1000Genomes	Global	Study-wide	5008	A=0.725	G=0.275
1000Genomes	South Asian	Sub	978	A=0.770	G=0.230
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.562	G=0.438
The Genome Aggregation Database	African	Sub	8698	A=0.659	G=0.341
The Genome Aggregation Database	American	Sub	838	A=0.740	G=0.260
The Genome Aggregation Database	East Asian	Sub	1620	A=0.946	G=0.054
The Genome Aggregation Database	Europe	Sub	18456	A=0.592	G=0.407
The Genome Aggregation Database	Global	Study-wide	29914	A=0.633	G=0.366
The Genome Aggregation Database	Other	Sub	302	A=0.480	G=0.520
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.570	G=0.430

PMID	Title	Author	Journal
23953852	Genome-wide association studies of maximum number of drinks.	Pan Y	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs3809404	1.02E-05	alcohol consumption	23953852

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs3809404