Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 12 | NC_000012.12:g.112048147G>A |
GRCh37.p13 chr 12 | NC_000012.11:g.112485951G>A |
NAA25 RefSeqGene | NG_017071.1:g.65685C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
NAA25 transcript | NM_024953.3:c. | N/A | Intron Variant |
NAA25 transcript variant X2 | XM_005253938.1:c. | N/A | Intron Variant |
NAA25 transcript variant X1 | XM_006719606.2:c. | N/A | Intron Variant |
NAA25 transcript variant X3 | XM_017019977.1:c. | N/A | Intron Variant |
NAA25 transcript variant X4 | XR_243023.3:n. | N/A | Intron Variant |
NAA25 transcript variant X5 | XR_944730.2:n. | N/A | Intron Variant |
NAA25 transcript variant X6 | XR_944731.2:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.880 | A=0.120 |
1000Genomes | American | Sub | 694 | G=0.850 | A=0.150 |
1000Genomes | East Asian | Sub | 1008 | G=0.426 | A=0.574 |
1000Genomes | Europe | Sub | 1006 | G=0.998 | A=0.002 |
1000Genomes | Global | Study-wide | 5008 | G=0.816 | A=0.184 |
1000Genomes | South Asian | Sub | 978 | G=0.920 | A=0.080 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.996 | A=0.004 |
The Genome Aggregation Database | African | Sub | 8710 | G=0.891 | A=0.109 |
The Genome Aggregation Database | American | Sub | 836 | G=0.820 | A=0.180 |
The Genome Aggregation Database | East Asian | Sub | 1612 | G=0.378 | A=0.622 |
The Genome Aggregation Database | Europe | Sub | 18498 | G=0.996 | A=0.003 |
The Genome Aggregation Database | Global | Study-wide | 29958 | G=0.927 | A=0.072 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.990 | A=0.010 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.928 | A=0.071 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.997 | A=0.003 |
PMID | Title | Author | Journal |
---|---|---|---|
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs3825388 | 0.000811 | alcohol consumption (maxi-drinks) | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr12 | 112449438 | 112449517 | E067 | -36434 |
chr12 | 112456259 | 112456309 | E067 | -29642 |
chr12 | 112456322 | 112456497 | E067 | -29454 |
chr12 | 112456513 | 112456635 | E067 | -29316 |
chr12 | 112456671 | 112457162 | E067 | -28789 |
chr12 | 112457180 | 112457298 | E067 | -28653 |
chr12 | 112449438 | 112449517 | E068 | -36434 |
chr12 | 112453470 | 112453510 | E068 | -32441 |
chr12 | 112503799 | 112504124 | E068 | 17848 |
chr12 | 112534059 | 112534157 | E068 | 48108 |
chr12 | 112534184 | 112534865 | E068 | 48233 |
chr12 | 112449438 | 112449517 | E070 | -36434 |
chr12 | 112445457 | 112445578 | E071 | -40373 |
chr12 | 112445610 | 112445660 | E071 | -40291 |
chr12 | 112449438 | 112449517 | E071 | -36434 |
chr12 | 112454969 | 112455363 | E071 | -30588 |
chr12 | 112487127 | 112487183 | E071 | 1176 |
chr12 | 112503799 | 112504124 | E071 | 17848 |
chr12 | 112528474 | 112528554 | E071 | 42523 |
chr12 | 112445457 | 112445578 | E072 | -40373 |
chr12 | 112445610 | 112445660 | E072 | -40291 |
chr12 | 112448648 | 112448833 | E072 | -37118 |
chr12 | 112449005 | 112449094 | E072 | -36857 |
chr12 | 112449105 | 112449163 | E072 | -36788 |
chr12 | 112449168 | 112449400 | E072 | -36551 |
chr12 | 112449438 | 112449517 | E072 | -36434 |
chr12 | 112454969 | 112455363 | E072 | -30588 |
chr12 | 112503799 | 112504124 | E072 | 17848 |
chr12 | 112528084 | 112528366 | E072 | 42133 |
chr12 | 112449005 | 112449094 | E073 | -36857 |
chr12 | 112449105 | 112449163 | E073 | -36788 |
chr12 | 112449168 | 112449400 | E073 | -36551 |
chr12 | 112449438 | 112449517 | E073 | -36434 |
chr12 | 112452966 | 112453016 | E073 | -32935 |
chr12 | 112453283 | 112453439 | E073 | -32512 |
chr12 | 112453470 | 112453510 | E073 | -32441 |
chr12 | 112453539 | 112453609 | E073 | -32342 |
chr12 | 112534184 | 112534865 | E073 | 48233 |
chr12 | 112449005 | 112449094 | E074 | -36857 |
chr12 | 112449105 | 112449163 | E074 | -36788 |
chr12 | 112449168 | 112449400 | E074 | -36551 |
chr12 | 112449438 | 112449517 | E074 | -36434 |
chr12 | 112485811 | 112485933 | E074 | -18 |
chr12 | 112486117 | 112486205 | E074 | 166 |
chr12 | 112503799 | 112504124 | E074 | 17848 |
chr12 | 112528084 | 112528366 | E074 | 42133 |
chr12 | 112528474 | 112528554 | E074 | 42523 |
chr12 | 112449438 | 112449517 | E081 | -36434 |
chr12 | 112449168 | 112449400 | E082 | -36551 |
chr12 | 112449438 | 112449517 | E082 | -36434 |
chr12 | 112453470 | 112453510 | E082 | -32441 |
chr12 | 112525442 | 112525502 | E082 | 39491 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr12 | 112450339 | 112452718 | E067 | -33233 |
chr12 | 112450339 | 112452718 | E068 | -33233 |
chr12 | 112450339 | 112452718 | E069 | -33233 |
chr12 | 112450339 | 112452718 | E070 | -33233 |
chr12 | 112450339 | 112452718 | E071 | -33233 |
chr12 | 112450339 | 112452718 | E072 | -33233 |
chr12 | 112450339 | 112452718 | E073 | -33233 |
chr12 | 112450339 | 112452718 | E074 | -33233 |
chr12 | 112450339 | 112452718 | E081 | -33233 |
chr12 | 112450339 | 112452718 | E082 | -33233 |