Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 14 | NC_000014.9:g.77468244T>C |
GRCh37.p13 chr 14 | NC_000014.8:g.77934587T>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
AHSA1 transcript variant 2 | NM_001321441.1:c. | N/A | Intron Variant |
AHSA1 transcript variant 1 | NM_012111.2:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.948 | C=0.052 |
1000Genomes | American | Sub | 694 | T=0.890 | C=0.110 |
1000Genomes | East Asian | Sub | 1008 | T=0.976 | C=0.024 |
1000Genomes | Europe | Sub | 1006 | T=0.860 | C=0.140 |
1000Genomes | Global | Study-wide | 5008 | T=0.899 | C=0.101 |
1000Genomes | South Asian | Sub | 978 | T=0.800 | C=0.200 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.867 | C=0.133 |
The Exome Aggregation Consortium | American | Sub | 3480 | T=0.922 | C=0.078 |
The Exome Aggregation Consortium | Asian | Sub | 8268 | T=0.800 | C=0.200 |
The Exome Aggregation Consortium | Europe | Sub | 9792 | T=0.859 | C=0.141 |
The Exome Aggregation Consortium | Global | Study-wide | 21750 | T=0.846 | C=0.153 |
The Exome Aggregation Consortium | Other | Sub | 210 | T=0.860 | C=0.140 |
The Genome Aggregation Database | African | Sub | 8698 | T=0.932 | C=0.068 |
The Genome Aggregation Database | American | Sub | 804 | T=0.890 | C=0.110 |
The Genome Aggregation Database | East Asian | Sub | 1620 | T=0.978 | C=0.022 |
The Genome Aggregation Database | Europe | Sub | 18320 | T=0.873 | C=0.126 |
The Genome Aggregation Database | Global | Study-wide | 29742 | T=0.896 | C=0.103 |
The Genome Aggregation Database | Other | Sub | 300 | T=0.880 | C=0.120 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.904 | C=0.095 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.873 | C=0.127 |
PMID | Title | Author | Journal |
---|---|---|---|
20158304 | A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations. | Lind PA | Twin Res Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs3825694 | 2.42E-05 | alcohol and nictotine co-dependence | 20158304 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
---|---|---|---|---|---|---|
Chr14:77934587 | TMED8 | ENSG00000100580.7 | T>C | 1.0103e-5 | 91135 | Anterior_cingulate_cortex |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr14 | 77926504 | 77926554 | E067 | -8033 |
chr14 | 77926585 | 77926664 | E067 | -7923 |
chr14 | 77926504 | 77926554 | E068 | -8033 |
chr14 | 77926585 | 77926664 | E068 | -7923 |
chr14 | 77927168 | 77927218 | E068 | -7369 |
chr14 | 77927874 | 77927967 | E068 | -6620 |
chr14 | 77928022 | 77928062 | E068 | -6525 |
chr14 | 77963929 | 77964009 | E068 | 29342 |
chr14 | 77926177 | 77926248 | E069 | -8339 |
chr14 | 77926352 | 77926442 | E069 | -8145 |
chr14 | 77926504 | 77926554 | E069 | -8033 |
chr14 | 77926585 | 77926664 | E069 | -7923 |
chr14 | 77927874 | 77927967 | E069 | -6620 |
chr14 | 77928022 | 77928062 | E069 | -6525 |
chr14 | 77926504 | 77926554 | E070 | -8033 |
chr14 | 77926585 | 77926664 | E070 | -7923 |
chr14 | 77938739 | 77938829 | E070 | 4152 |
chr14 | 77938883 | 77939009 | E070 | 4296 |
chr14 | 77926177 | 77926248 | E071 | -8339 |
chr14 | 77926352 | 77926442 | E071 | -8145 |
chr14 | 77984451 | 77984527 | E071 | 49864 |
chr14 | 77926504 | 77926554 | E072 | -8033 |
chr14 | 77926585 | 77926664 | E072 | -7923 |
chr14 | 77926504 | 77926554 | E073 | -8033 |
chr14 | 77926585 | 77926664 | E073 | -7923 |
chr14 | 77922269 | 77922333 | E074 | -12254 |
chr14 | 77922415 | 77922455 | E074 | -12132 |
chr14 | 77922484 | 77922565 | E074 | -12022 |
chr14 | 77922269 | 77922333 | E082 | -12254 |
chr14 | 77922415 | 77922455 | E082 | -12132 |
chr14 | 77922484 | 77922565 | E082 | -12022 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr14 | 77923280 | 77926098 | E067 | -8489 |
chr14 | 77964531 | 77964727 | E067 | 29944 |
chr14 | 77964780 | 77965879 | E067 | 30193 |
chr14 | 77923280 | 77926098 | E068 | -8489 |
chr14 | 77964363 | 77964522 | E068 | 29776 |
chr14 | 77964531 | 77964727 | E068 | 29944 |
chr14 | 77964780 | 77965879 | E068 | 30193 |
chr14 | 77923280 | 77926098 | E069 | -8489 |
chr14 | 77923280 | 77926098 | E070 | -8489 |
chr14 | 77923280 | 77926098 | E071 | -8489 |
chr14 | 77964780 | 77965879 | E071 | 30193 |
chr14 | 77923280 | 77926098 | E072 | -8489 |
chr14 | 77964780 | 77965879 | E072 | 30193 |
chr14 | 77923280 | 77926098 | E073 | -8489 |
chr14 | 77964363 | 77964522 | E073 | 29776 |
chr14 | 77964531 | 77964727 | E073 | 29944 |
chr14 | 77964780 | 77965879 | E073 | 30193 |
chr14 | 77923280 | 77926098 | E074 | -8489 |
chr14 | 77964531 | 77964727 | E074 | 29944 |
chr14 | 77964780 | 77965879 | E074 | 30193 |
chr14 | 77923280 | 77926098 | E081 | -8489 |
chr14 | 77923280 | 77926098 | E082 | -8489 |
chr14 | 77964363 | 77964522 | E082 | 29776 |
chr14 | 77964531 | 77964727 | E082 | 29944 |
chr14 | 77964780 | 77965879 | E082 | 30193 |