SNP Detail Info-rs3843552

Organism: Homo sapiens

Alleles: G>A / G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0127 (3808/29876,GnomAD)
T=0140 (4095/29118,TOPMED)
T=0174 (872/5008,1000G)
T=0060 (231/3854,ALSPAC)
T=0048 (178/3708,TWINSUK)

Position: chr8:100801040 (GRCh38.p7) (8q22.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 2 publication(s)

Genomic View: See rs on genome

Enhancer: 20 Enhancers around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.756	T=0.244
1000Genomes	American	Sub	694	G=0.800	T=0.200
1000Genomes	East Asian	Sub	1008	G=0.712	T=0.288
1000Genomes	Europe	Sub	1006	G=0.948	T=0.052
1000Genomes	Global	Study-wide	5008	G=0.826	T=0.174
1000Genomes	South Asian	Sub	978	G=0.930	T=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.940	T=0.060
The Genome Aggregation Database	African	Sub	8670	G=0.763	T=0.237
The Genome Aggregation Database	American	Sub	834	G=0.800	T=0.200
The Genome Aggregation Database	East Asian	Sub	1606	G=0.684	T=0.316
The Genome Aggregation Database	Europe	Sub	18464	G=0.942	T=0.057
The Genome Aggregation Database	Global	Study-wide	29876	G=0.872	T=0.127
The Genome Aggregation Database	Other	Sub	302	G=0.950	T=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.859	T=0.140
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.952	T=0.048

PMID	Title	Author	Journal
21989058	Association of 8q22.3 locus in Chinese Han with idiopathic premature ovarian failure (POF).	Qin Y	Hum Mol Genet
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs3843552	6.61E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr8	101773554	101775046	E068	-38132
chr8	101847470	101848214	E068	34292
chr8	101764400	101764498	E071	-48680
chr8	101764560	101764751	E071	-48427
chr8	101764770	101764823	E071	-48355
chr8	101803597	101803661	E072	-9517
chr8	101803758	101804338	E074	-8840
chr8	101804391	101804510	E074	-8668
chr8	101847470	101848214	E074	34292
chr8	101848259	101848339	E074	35081
chr8	101859230	101859295	E074	46052
chr8	101775773	101775823	E081	-37355
chr8	101775832	101775882	E081	-37296
chr8	101775951	101776079	E081	-37099
chr8	101803597	101803661	E081	-9517
chr8	101803758	101804338	E081	-8840
chr8	101804391	101804510	E081	-8668
chr8	101851627	101851825	E081	38449
chr8	101851845	101851917	E081	38667
chr8	101775334	101775644	E082	-37534

rs3843552