rs3843841

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
A==0363 (7569/20810,GnomAD)
A==0464 (1750/3775,1000G)
A==0217 (804/3708,TWINSUK)
A==0223 (644/2889,ALSPAC)
chrX:70265679 (GRCh38.p7) (Xq13.1)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
29 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.70265679A>C
GRCh37.p13 chr XNC_000023.10:g.69485529A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003A=0.748C=0.252
1000GenomesAmericanSub524A=0.230C=0.770
1000GenomesEast AsianSub764A=0.580C=0.420
1000GenomesEuropeSub766A=0.240C=0.760
1000GenomesGlobalStudy-wide3775A=0.464C=0.536
1000GenomesSouth AsianSub718A=0.360C=0.640
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889A=0.223C=0.777
The Genome Aggregation DatabaseAfricanSub5864A=0.693C=0.307
The Genome Aggregation DatabaseAmericanSub616A=0.210C=0.790
The Genome Aggregation DatabaseEast AsianSub1006A=0.586C=0.414
The Genome Aggregation DatabaseEuropeSub13139A=0.208C=0.791
The Genome Aggregation DatabaseGlobalStudy-wide20810A=0.363C=0.636
The Genome Aggregation DatabaseOtherSub185A=0.240C=0.760
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.217C=0.783
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs38438410.000401alcohol dependence20201924

eQTL of rs3843841 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3843841 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chrX6951344169513521E07027912

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chrX6950916569509448E06723636
chrX6950946169510259E06723932
chrX6951040869510685E06724879
chrX6950916569509448E06823636
chrX6950946169510259E06823932
chrX6951040869510685E06824879
chrX6950916569509448E06923636
chrX6950946169510259E06923932
chrX6951040869510685E06924879
chrX6950916569509448E07023636
chrX6950946169510259E07023932
chrX6951040869510685E07024879
chrX6950916569509448E07123636
chrX6950946169510259E07123932
chrX6951040869510685E07124879
chrX6950916569509448E07223636
chrX6950946169510259E07223932
chrX6951040869510685E07224879
chrX6950916569509448E07323636
chrX6950946169510259E07323932
chrX6951040869510685E07324879
chrX6950916569509448E07423636
chrX6950946169510259E07423932
chrX6951040869510685E07424879
chrX6950946169510259E08123932
chrX6951040869510685E08124879
chrX6950916569509448E08223636
chrX6950946169510259E08223932
chrX6951040869510685E08224879