SNP Detail Info-rs3847794

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0261 (7834/29938,GnomAD)
G=0216 (6310/29118,TOPMED)
G=0165 (828/5008,1000G)

Position: chr12:94135049 (GRCh38.p7) (12q22)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 35 Enhancers around

Promoter: 18 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 12	NC_000012.12:g.94135049A>G
GRCh37.p13 chr 12	NC_000012.11:g.94528825A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.986	G=0.014
1000Genomes	American	Sub	694	A=0.630	G=0.370
1000Genomes	East Asian	Sub	1008	A=0.894	G=0.106
1000Genomes	Europe	Sub	1006	A=0.663	G=0.337
1000Genomes	Global	Study-wide	5008	A=0.835	G=0.165
1000Genomes	South Asian	Sub	978	A=0.890	G=0.110
The Genome Aggregation Database	African	Sub	8722	A=0.933	G=0.067
The Genome Aggregation Database	American	Sub	836	A=0.640	G=0.360
The Genome Aggregation Database	East Asian	Sub	1616	A=0.888	G=0.112
The Genome Aggregation Database	Europe	Sub	18462	A=0.638	G=0.361
The Genome Aggregation Database	Global	Study-wide	29938	A=0.738	G=0.261
The Genome Aggregation Database	Other	Sub	302	A=0.670	G=0.330
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.783	G=0.216

PMID	Title	Author	Journal
23942779	A genome-wide association study of behavioral disinhibition.	McGue M	Behav Genet

SNP ID	p-value	Traits	Study
rs3847794	7E-06	alcohol dependence	23942779

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr12	94558098	94558487	E067	29273
chr12	94558494	94559346	E067	29669
chr12	94545252	94545892	E068	16427
chr12	94545973	94546086	E068	17148
chr12	94546089	94546753	E068	17264
chr12	94558098	94558487	E068	29273
chr12	94538515	94540903	E069	9690
chr12	94558494	94559346	E069	29669
chr12	94502086	94502206	E070	-26619
chr12	94502459	94502648	E070	-26177
chr12	94546808	94546894	E070	17983
chr12	94547183	94547679	E070	18358
chr12	94550861	94551251	E070	22036
chr12	94558098	94558487	E070	29273
chr12	94559474	94559568	E070	30649
chr12	94559584	94559756	E070	30759
chr12	94559812	94560146	E070	30987
chr12	94538515	94540903	E071	9690
chr12	94545252	94545892	E071	16427
chr12	94545973	94546086	E071	17148
chr12	94558098	94558487	E071	29273
chr12	94558494	94559346	E071	29669
chr12	94559474	94559568	E071	30649
chr12	94559584	94559756	E071	30759
chr12	94545973	94546086	E072	17148
chr12	94545252	94545892	E074	16427
chr12	94538515	94540903	E081	9690
chr12	94545252	94545892	E081	16427
chr12	94545973	94546086	E081	17148
chr12	94546089	94546753	E081	17264
chr12	94546808	94546894	E081	17983
chr12	94558098	94558487	E081	29273
chr12	94558494	94559346	E081	29669
chr12	94565217	94566179	E081	36392
chr12	94558494	94559346	E082	29669

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr12	94494877	94496762	E067	-32063
chr12	94540979	94545184	E067	12154
chr12	94494877	94496762	E068	-32063
chr12	94540979	94545184	E068	12154
chr12	94494877	94496762	E069	-32063
chr12	94540979	94545184	E069	12154
chr12	94494877	94496762	E070	-32063
chr12	94540979	94545184	E070	12154
chr12	94494877	94496762	E071	-32063
chr12	94540979	94545184	E071	12154
chr12	94494877	94496762	E072	-32063
chr12	94540979	94545184	E072	12154
chr12	94494877	94496762	E073	-32063
chr12	94540979	94545184	E073	12154
chr12	94494877	94496762	E074	-32063
chr12	94540979	94545184	E074	12154
chr12	94494877	94496762	E082	-32063
chr12	94540979	94545184	E082	12154

rs3847794