SNP Detail Info-rs3849883

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0016 (504/29986,GnomAD)
G==0026 (760/29118,TOPMED)
G==0019 (96/5008,1000G)
G==0000 (0/3854,ALSPAC)
G==0000 (1/3708,TWINSUK)

Position: chr9:30639207 (GRCh38.p7) (9p21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.30639207G>A
GRCh37.p13 chr 9	NC_000009.11:g.30639205G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.070	A=0.930
1000Genomes	American	Sub	694	G=0.010	A=0.990
1000Genomes	East Asian	Sub	1008	G=0.000	A=1.000
1000Genomes	Europe	Sub	1006	G=0.000	A=1.000
1000Genomes	Global	Study-wide	5008	G=0.019	A=0.981
1000Genomes	South Asian	Sub	978	G=0.000	A=1.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.000	A=1.000
The Genome Aggregation Database	African	Sub	8726	G=0.057	A=0.943
The Genome Aggregation Database	American	Sub	838	G=0.000	A=1.000
The Genome Aggregation Database	East Asian	Sub	1620	G=0.000	A=1.000
The Genome Aggregation Database	Europe	Sub	18500	G=0.000	A=1.000
The Genome Aggregation Database	Global	Study-wide	29986	G=0.016	A=0.983
The Genome Aggregation Database	Other	Sub	302	G=0.000	A=1.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.026	A=0.973
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.000	A=1.000

PMID	Title	Author	Journal
22481050	Genetic influences on craving for alcohol.	Agrawal A	Addict Behav

SNP ID	p-value	Traits	Study
rs3849883	5.45E-06	alcohol craving with or without dependence	22481050

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs3849883