Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 6 | NC_000006.12:g.87253970A>G |
GRCh37.p13 chr 6 | NC_000006.11:g.87963688A>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
ZNF292 transcript | NM_015021.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X9 | XM_005248697.4:c. | N/A | Intron Variant |
ZNF292 transcript variant X10 | XM_011535625.2:c. | N/A | Intron Variant |
ZNF292 transcript variant X1 | XM_017010575.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X1 | XM_017010576.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X2 | XM_017010577.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X4 | XM_017010578.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X4 | XM_017010579.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X5 | XM_017010580.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X7 | XM_017010581.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X6 | XM_017010582.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X7 | XM_017010583.1:c. | N/A | Intron Variant |
ZNF292 transcript variant X10 | XM_017010584.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.994 | G=0.006 |
1000Genomes | American | Sub | 694 | A=0.940 | G=0.060 |
1000Genomes | East Asian | Sub | 1008 | A=0.977 | G=0.023 |
1000Genomes | Europe | Sub | 1006 | A=0.924 | G=0.076 |
1000Genomes | Global | Study-wide | 5008 | A=0.967 | G=0.033 |
1000Genomes | South Asian | Sub | 978 | A=0.980 | G=0.020 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.925 | G=0.075 |
The Genome Aggregation Database | African | Sub | 8734 | A=0.987 | G=0.013 |
The Genome Aggregation Database | American | Sub | 836 | A=0.960 | G=0.040 |
The Genome Aggregation Database | East Asian | Sub | 1622 | A=0.982 | G=0.018 |
The Genome Aggregation Database | Europe | Sub | 18496 | A=0.937 | G=0.062 |
The Genome Aggregation Database | Global | Study-wide | 29990 | A=0.955 | G=0.044 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.970 | G=0.030 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.948 | G=0.051 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.926 | G=0.074 |
PMID | Title | Author | Journal |
---|---|---|---|
19268276 | Genome-wide association study of smoking initiation and current smoking. | Vink JM | Am J Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs3857487 | 0.000788 | nicotine smoking | 19268276 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr6 | 87922075 | 87922247 | E067 | -41441 |
chr6 | 87922410 | 87922582 | E067 | -41106 |
chr6 | 87924599 | 87924791 | E067 | -38897 |
chr6 | 87922075 | 87922247 | E068 | -41441 |
chr6 | 87922410 | 87922582 | E068 | -41106 |
chr6 | 87922847 | 87923004 | E068 | -40684 |
chr6 | 87923260 | 87923476 | E068 | -40212 |
chr6 | 87923700 | 87923750 | E068 | -39938 |
chr6 | 87924023 | 87924073 | E068 | -39615 |
chr6 | 87922075 | 87922247 | E069 | -41441 |
chr6 | 87922410 | 87922582 | E069 | -41106 |
chr6 | 87922847 | 87923004 | E069 | -40684 |
chr6 | 87923260 | 87923476 | E069 | -40212 |
chr6 | 87923700 | 87923750 | E069 | -39938 |
chr6 | 87922410 | 87922582 | E070 | -41106 |
chr6 | 87922847 | 87923004 | E070 | -40684 |
chr6 | 87924023 | 87924073 | E070 | -39615 |
chr6 | 87924599 | 87924791 | E070 | -38897 |
chr6 | 87922075 | 87922247 | E071 | -41441 |
chr6 | 87922410 | 87922582 | E071 | -41106 |
chr6 | 87922847 | 87923004 | E071 | -40684 |
chr6 | 87922075 | 87922247 | E072 | -41441 |
chr6 | 87922410 | 87922582 | E072 | -41106 |
chr6 | 87922847 | 87923004 | E072 | -40684 |
chr6 | 87923260 | 87923476 | E072 | -40212 |
chr6 | 87922075 | 87922247 | E073 | -41441 |
chr6 | 87922075 | 87922247 | E074 | -41441 |
chr6 | 87922410 | 87922582 | E074 | -41106 |
chr6 | 87924023 | 87924073 | E074 | -39615 |
chr6 | 87934443 | 87936005 | E081 | -27683 |
chr6 | 87923260 | 87923476 | E082 | -40212 |
chr6 | 87923700 | 87923750 | E082 | -39938 |
chr6 | 87924023 | 87924073 | E082 | -39615 |
chr6 | 87924599 | 87924791 | E082 | -38897 |