rs3857487

Homo sapiens
A>G
ZNF292 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0044 (1337/29990,GnomAD)
G=0051 (1501/29118,TOPMED)
G=0033 (164/5008,1000G)
G=0075 (290/3854,ALSPAC)
G=0074 (273/3708,TWINSUK)
chr6:87253970 (GRCh38.p7) (6q14.3)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.87253970A>G
GRCh37.p13 chr 6NC_000006.11:g.87963688A>G

Gene: ZNF292, zinc finger protein 292(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF292 transcriptNM_015021.1:c.N/AIntron Variant
ZNF292 transcript variant X9XM_005248697.4:c.N/AIntron Variant
ZNF292 transcript variant X10XM_011535625.2:c.N/AIntron Variant
ZNF292 transcript variant X1XM_017010575.1:c.N/AIntron Variant
ZNF292 transcript variant X1XM_017010576.1:c.N/AIntron Variant
ZNF292 transcript variant X2XM_017010577.1:c.N/AIntron Variant
ZNF292 transcript variant X4XM_017010578.1:c.N/AIntron Variant
ZNF292 transcript variant X4XM_017010579.1:c.N/AIntron Variant
ZNF292 transcript variant X5XM_017010580.1:c.N/AIntron Variant
ZNF292 transcript variant X7XM_017010581.1:c.N/AIntron Variant
ZNF292 transcript variant X6XM_017010582.1:c.N/AIntron Variant
ZNF292 transcript variant X7XM_017010583.1:c.N/AIntron Variant
ZNF292 transcript variant X10XM_017010584.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.994G=0.006
1000GenomesAmericanSub694A=0.940G=0.060
1000GenomesEast AsianSub1008A=0.977G=0.023
1000GenomesEuropeSub1006A=0.924G=0.076
1000GenomesGlobalStudy-wide5008A=0.967G=0.033
1000GenomesSouth AsianSub978A=0.980G=0.020
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.925G=0.075
The Genome Aggregation DatabaseAfricanSub8734A=0.987G=0.013
The Genome Aggregation DatabaseAmericanSub836A=0.960G=0.040
The Genome Aggregation DatabaseEast AsianSub1622A=0.982G=0.018
The Genome Aggregation DatabaseEuropeSub18496A=0.937G=0.062
The Genome Aggregation DatabaseGlobalStudy-wide29990A=0.955G=0.044
The Genome Aggregation DatabaseOtherSub302A=0.970G=0.030
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.948G=0.051
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.926G=0.074
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs38574870.000788nicotine smoking19268276

eQTL of rs3857487 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3857487 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr68792207587922247E067-41441
chr68792241087922582E067-41106
chr68792459987924791E067-38897
chr68792207587922247E068-41441
chr68792241087922582E068-41106
chr68792284787923004E068-40684
chr68792326087923476E068-40212
chr68792370087923750E068-39938
chr68792402387924073E068-39615
chr68792207587922247E069-41441
chr68792241087922582E069-41106
chr68792284787923004E069-40684
chr68792326087923476E069-40212
chr68792370087923750E069-39938
chr68792241087922582E070-41106
chr68792284787923004E070-40684
chr68792402387924073E070-39615
chr68792459987924791E070-38897
chr68792207587922247E071-41441
chr68792241087922582E071-41106
chr68792284787923004E071-40684
chr68792207587922247E072-41441
chr68792241087922582E072-41106
chr68792284787923004E072-40684
chr68792326087923476E072-40212
chr68792207587922247E073-41441
chr68792207587922247E074-41441
chr68792241087922582E074-41106
chr68792402387924073E074-39615
chr68793444387936005E081-27683
chr68792326087923476E082-40212
chr68792370087923750E082-39938
chr68792402387924073E082-39615
chr68792459987924791E082-38897