SNP Detail Info-rs3862266

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0209 (6268/29916,GnomAD)
A=0218 (6368/29118,TOPMED)
A=0152 (763/5008,1000G)
A=0291 (1121/3854,ALSPAC)
A=0297 (1102/3708,TWINSUK)

Position: chr1:50356763 (GRCh38.p7) (1p32.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 14 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.50356763G>A
GRCh37.p13 chr 1	NC_000001.10:g.50822435G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.908	A=0.092
1000Genomes	American	Sub	694	G=0.800	A=0.200
1000Genomes	East Asian	Sub	1008	G=0.999	A=0.001
1000Genomes	Europe	Sub	1006	G=0.706	A=0.294
1000Genomes	Global	Study-wide	5008	G=0.848	A=0.152
1000Genomes	South Asian	Sub	978	G=0.790	A=0.210
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.709	A=0.291
The Genome Aggregation Database	African	Sub	8706	G=0.879	A=0.121
The Genome Aggregation Database	American	Sub	836	G=0.800	A=0.200
The Genome Aggregation Database	East Asian	Sub	1618	G=0.999	A=0.001
The Genome Aggregation Database	Europe	Sub	18454	G=0.732	A=0.267
The Genome Aggregation Database	Global	Study-wide	29916	G=0.790	A=0.209
The Genome Aggregation Database	Other	Sub	302	G=0.650	A=0.350
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.781	A=0.218
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.703	A=0.297

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs3862266	0.00094	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	50834412	50834602	E072	11977
chr1	50834412	50834602	E081	11977

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr1	50798531	50798662	E067	-23773
chr1	50798664	50799685	E067	-22750
chr1	50798531	50798662	E068	-23773
chr1	50798664	50799685	E068	-22750
chr1	50798664	50799685	E069	-22750
chr1	50798531	50798662	E070	-23773
chr1	50798664	50799685	E070	-22750
chr1	50798664	50799685	E071	-22750
chr1	50798531	50798662	E072	-23773
chr1	50798664	50799685	E072	-22750
chr1	50798531	50798662	E073	-23773
chr1	50798664	50799685	E073	-22750
chr1	50798531	50798662	E082	-23773
chr1	50798664	50799685	E082	-22750

rs3862266