rs386752273

Homo sapiens
GG>TA
KIAA1549L : Intron Variant
Check p-value
MNVMultipleNucleotideVariation
None (
chr11:33393606-33393607 (GRCh38.p7) (11p13)
AD
GWASdb2
1   publication(s)
See rs on genome
31 Enhancers around
27 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.33393606_33393607delGGinsTA
GRCh37.p13 chr 11NC_000011.9:g.33415152_33415153delGGinsTA

Gene: KIAA1549L, KIAA1549-like(plus strand)

Molecule type Change Amino acid[Codon] SO Term
KIAA1549L transcriptNM_012194.2:c.N/AGenic Upstream Transcript Variant
KIAA1549L transcript variant X3XM_005252847.3:c.N/AIntron Variant
KIAA1549L transcript variant X5XM_011519970.2:c.N/AIntron Variant
KIAA1549L transcript variant X6XM_017017486.1:c.N/AIntron Variant
KIAA1549L transcript variant X2XM_005252848.3:c.N/AGenic Upstream Transcript Variant
KIAA1549L transcript variant X4XM_011519969.2:c.N/AGenic Upstream Transcript Variant
KIAA1549L transcript variant X1XM_017017484.1:c.N/AGenic Upstream Transcript Variant
KIAA1549L transcript variant X3XM_017017485.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs3867522730.000213alcohol dependence20201924

eQTL of rs386752273 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs386752273 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr113340426733405380E068-9772
chr113336625133366388E069-48764
chr113343334033433414E06918188
chr113343348333433602E06918331
chr113343395033434202E06918798
chr113340161333401780E070-13372
chr113341231033412453E070-2699
chr113341268533413425E070-1727
chr113342361533423936E0708463
chr113336625133366388E071-48764
chr113343334033433414E07218188
chr113343316233433212E07318010
chr113343334033433414E07318188
chr113343348333433602E07318331
chr113343395033434202E07318798
chr113339678433396944E081-18208
chr113340092433401024E081-14128
chr113340124833401339E081-13813
chr113340143133401530E081-13622
chr113342739233427442E08112240
chr113342751933427678E08112367
chr113342778833428012E08112636
chr113342805233428144E08112900
chr113342818333428263E08113031
chr113345683933457054E08141687
chr113339678433396944E082-18208
chr113340092433401024E082-14128
chr113340124833401339E082-13813
chr113340143133401530E082-13622
chr113340161333401780E082-13372
chr113346495633465021E08249804








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr113339696833399340E067-15812
chr113339943633399583E067-15569
chr113339962833400000E067-15152
chr113340004933400099E067-15053
chr113339696833399340E068-15812
chr113339943633399583E068-15569
chr113339962833400000E068-15152
chr113339696833399340E069-15812
chr113339943633399583E069-15569
chr113339962833400000E069-15152
chr113339696833399340E070-15812
chr113339943633399583E070-15569
chr113339696833399340E071-15812
chr113339696833399340E072-15812
chr113339943633399583E072-15569
chr113339962833400000E072-15152
chr113340004933400099E072-15053
chr113339696833399340E073-15812
chr113339943633399583E073-15569
chr113339962833400000E073-15152
chr113340004933400099E073-15053
chr113339696833399340E074-15812
chr113339943633399583E081-15569
chr113339696833399340E082-15812
chr113339943633399583E082-15569
chr113339962833400000E082-15152
chr113340004933400099E082-15053