Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 6 | NC_000006.12:g.147491880C>T |
GRCh37.p13 chr 6 | NC_000006.11:g.147813016C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.532 | T=0.468 |
1000Genomes | American | Sub | 694 | C=0.330 | T=0.670 |
1000Genomes | East Asian | Sub | 1008 | C=0.233 | T=0.767 |
1000Genomes | Europe | Sub | 1006 | C=0.269 | T=0.731 |
1000Genomes | Global | Study-wide | 5008 | C=0.357 | T=0.643 |
1000Genomes | South Asian | Sub | 978 | C=0.360 | T=0.640 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.252 | T=0.748 |
The Genome Aggregation Database | African | Sub | 8710 | C=0.467 | T=0.533 |
The Genome Aggregation Database | American | Sub | 836 | C=0.350 | T=0.650 |
The Genome Aggregation Database | East Asian | Sub | 1612 | C=0.212 | T=0.788 |
The Genome Aggregation Database | Europe | Sub | 18446 | C=0.281 | T=0.718 |
The Genome Aggregation Database | Global | Study-wide | 29906 | C=0.334 | T=0.665 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.340 | T=0.660 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.352 | T=0.647 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.255 | T=0.745 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs389674 | 0.000785 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr6 | 147797680 | 147797917 | E068 | -15099 |
chr6 | 147768276 | 147768453 | E070 | -44563 |
chr6 | 147768496 | 147768764 | E070 | -44252 |
chr6 | 147768771 | 147769292 | E070 | -43724 |
chr6 | 147769962 | 147770075 | E070 | -42941 |
chr6 | 147770162 | 147770248 | E070 | -42768 |
chr6 | 147770367 | 147770500 | E070 | -42516 |
chr6 | 147824746 | 147825106 | E070 | 11730 |
chr6 | 147769342 | 147769930 | E071 | -43086 |
chr6 | 147769962 | 147770075 | E071 | -42941 |
chr6 | 147797161 | 147797321 | E071 | -15695 |
chr6 | 147797680 | 147797917 | E071 | -15099 |
chr6 | 147797680 | 147797917 | E072 | -15099 |
chr6 | 147797680 | 147797917 | E074 | -15099 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr6 | 147827750 | 147831995 | E067 | 14734 |
chr6 | 147827750 | 147831995 | E068 | 14734 |
chr6 | 147827750 | 147831995 | E069 | 14734 |
chr6 | 147827750 | 147831995 | E071 | 14734 |
chr6 | 147827750 | 147831995 | E072 | 14734 |
chr6 | 147827750 | 147831995 | E073 | 14734 |
chr6 | 147827750 | 147831995 | E074 | 14734 |
chr6 | 147827750 | 147831995 | E082 | 14734 |