rs3902786

Homo sapiens
A>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0183 (5502/29948,GnomAD)
T=0166 (4842/29118,TOPMED)
T=0183 (918/5008,1000G)
T=0225 (866/3854,ALSPAC)
T=0245 (907/3708,TWINSUK)
chr10:131083585 (GRCh38.p7) (10q26.3)
AD
GWASdb2
1   publication(s)
See rs on genome
143 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.131083585A>T
GRCh37.p13 chr 10NC_000010.10:g.132881848A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.918T=0.082
1000GenomesAmericanSub694A=0.790T=0.210
1000GenomesEast AsianSub1008A=0.809T=0.191
1000GenomesEuropeSub1006A=0.785T=0.215
1000GenomesGlobalStudy-wide5008A=0.817T=0.183
1000GenomesSouth AsianSub978A=0.740T=0.260
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.775T=0.225
The Genome Aggregation DatabaseAfricanSub8722A=0.901T=0.099
The Genome Aggregation DatabaseAmericanSub838A=0.770T=0.230
The Genome Aggregation DatabaseEast AsianSub1618A=0.761T=0.239
The Genome Aggregation DatabaseEuropeSub18468A=0.783T=0.216
The Genome Aggregation DatabaseGlobalStudy-wide29948A=0.816T=0.183
The Genome Aggregation DatabaseOtherSub302A=0.790T=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.833T=0.166
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.755T=0.245
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs39027860.000131alcohol dependence21314694

eQTL of rs3902786 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3902786 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10132864031132864237E067-17611
chr10132864262132864645E067-17203
chr10132907657132907707E06725809
chr10132907793132907864E06725945
chr10132907940132908228E06726092
chr10132908384132908480E06726536
chr10132929388132929632E06747540
chr10132929676132930986E06747828
chr10132930998132931193E06749150
chr10132924304132924558E06842456
chr10132924589132925010E06842741
chr10132925117132925845E06843269
chr10132907395132907480E06925547
chr10132907544132907598E06925696
chr10132907657132907707E06925809
chr10132907793132907864E06925945
chr10132841454132841601E070-40247
chr10132841636132841747E070-40101
chr10132841789132841877E070-39971
chr10132846612132846666E070-35182
chr10132846793132847131E070-34717
chr10132847195132847343E070-34505
chr10132847369132847702E070-34146
chr10132891315132891394E0709467
chr10132891818132891869E0709970
chr10132891949132892004E07010101
chr10132892309132892544E07010461
chr10132892593132892732E07010745
chr10132892787132893426E07010939
chr10132893747132893851E07011899
chr10132896754132896848E07014906
chr10132896895132896945E07015047
chr10132897058132897120E07015210
chr10132897154132897543E07015306
chr10132897587132897658E07015739
chr10132897749132897813E07015901
chr10132897853132898000E07016005
chr10132899078132899142E07017230
chr10132899279132899415E07017431
chr10132899712132899805E07017864
chr10132900594132900753E07018746
chr10132900760132900814E07018912
chr10132901031132901381E07019183
chr10132901588132901649E07019740
chr10132915028132915108E07033180
chr10132917031132917147E07035183
chr10132917337132917476E07035489
chr10132864031132864237E072-17611
chr10132864262132864645E072-17203
chr10132907657132907707E07225809
chr10132907793132907864E07225945
chr10132907940132908228E07226092
chr10132864031132864237E073-17611
chr10132864262132864645E073-17203
chr10132907395132907480E07325547
chr10132907544132907598E07325696
chr10132907657132907707E07325809
chr10132907793132907864E07325945
chr10132907940132908228E07326092
chr10132908384132908480E07326536
chr10132924304132924558E07342456
chr10132924589132925010E07342741
chr10132907657132907707E07425809
chr10132907793132907864E07425945
chr10132907940132908228E07426092
chr10132838713132838757E081-43091
chr10132842621132842723E081-39125
chr10132842993132843043E081-38805
chr10132843132132843248E081-38600
chr10132843446132843534E081-38314
chr10132843678132843734E081-38114
chr10132844352132844451E081-37397
chr10132844538132844619E081-37229
chr10132846612132846666E081-35182
chr10132846793132847131E081-34717
chr10132847369132847702E081-34146
chr10132876091132876156E081-5692
chr10132879241132879295E081-2553
chr10132892787132893426E08110939
chr10132893747132893851E08111899
chr10132894303132894401E08112455
chr10132896754132896848E08114906
chr10132896895132896945E08115047
chr10132897058132897120E08115210
chr10132897154132897543E08115306
chr10132897587132897658E08115739
chr10132897749132897813E08115901
chr10132897853132898000E08116005
chr10132898748132898976E08116900
chr10132899078132899142E08117230
chr10132899279132899415E08117431
chr10132899712132899805E08117864
chr10132900594132900753E08118746
chr10132900760132900814E08118912
chr10132901031132901381E08119183
chr10132901588132901649E08119740
chr10132907395132907480E08125547
chr10132907544132907598E08125696
chr10132907657132907707E08125809
chr10132907793132907864E08125945
chr10132907940132908228E08126092
chr10132908384132908480E08126536
chr10132914000132914072E08132152
chr10132914203132914345E08132355
chr10132915028132915108E08133180
chr10132915199132915514E08133351
chr10132918046132918161E08136198
chr10132918384132918495E08136536
chr10132923611132923860E08141763
chr10132924304132924558E08142456
chr10132924589132925010E08142741
chr10132925117132925845E08143269
chr10132929676132930986E08147828
chr10132930998132931193E08149150
chr10132843132132843248E082-38600
chr10132846793132847131E082-34717
chr10132847195132847343E082-34505
chr10132847369132847702E082-34146
chr10132897154132897543E08215306
chr10132897587132897658E08215739
chr10132897749132897813E08215901
chr10132897853132898000E08216005
chr10132899279132899415E08217431
chr10132899712132899805E08217864
chr10132900594132900753E08218746
chr10132900760132900814E08218912
chr10132901031132901381E08219183
chr10132901588132901649E08219740
chr10132907657132907707E08225809
chr10132907793132907864E08225945
chr10132907940132908228E08226092
chr10132908384132908480E08226536
chr10132915028132915108E08233180
chr10132915199132915514E08233351
chr10132917783132917930E08235935
chr10132918046132918161E08236198
chr10132918384132918495E08236536
chr10132918674132918727E08236826
chr10132918744132918807E08236896
chr10132918982132919132E08237134
chr10132923611132923860E08241763
chr10132924304132924558E08242456
chr10132924589132925010E08242741