rs3903132

Homo sapiens
T>C
ZDHHC23 : Intron Variant
CCDC191 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0450 (13488/29936,GnomAD)
T==0418 (12184/29118,TOPMED)
T==0423 (2119/5008,1000G)
T==0462 (1780/3854,ALSPAC)
T==0449 (1666/3708,TWINSUK)
chr3:113981879 (GRCh38.p7) (3q13.31)
AD
GWASdb2
1   publication(s)
See rs on genome
8 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.113981879T>C
GRCh37.p13 chr 3NC_000003.11:g.113700726T>C

Gene: CCDC191, coiled-coil domain containing 191(minus strand)

Molecule type Change Amino acid[Codon] SO Term
CCDC191 transcript variant 1NM_020817.1:c.N/AIntron Variant
CCDC191 transcript variant X7XM_005247681.3:c.N/AIntron Variant
CCDC191 transcript variant X1XM_006713715.1:c.N/AIntron Variant
CCDC191 transcript variant X3XM_011513051.1:c.N/AIntron Variant
CCDC191 transcript variant X2XM_011513052.2:c.N/AIntron Variant
CCDC191 transcript variant X3XM_011513053.1:c.N/AIntron Variant
CCDC191 transcript variant X5XM_011513054.2:c.N/AIntron Variant
CCDC191 transcript variant X2XM_017006956.1:c.N/AIntron Variant
CCDC191 transcript variant X4XM_017006957.1:c.N/AIntron Variant
CCDC191 transcript variant X8XM_017006958.1:c.N/AIntron Variant
CCDC191 transcript variant X9XM_017006959.1:c.N/AIntron Variant
CCDC191 transcript variant X9XR_001740222.1:n.N/AIntron Variant

Gene: ZDHHC23, zinc finger DHHC-type containing 23(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZDHHC23 transcript variant 1NM_001320466.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant 2NM_001320467.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant 3NM_001320468.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant 4NM_173570.4:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant 5NR_135271.1:n.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X10XM_005247269.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X14XM_005247270.3:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X3XM_006713562.3:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X1XM_011512618.2:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X7XM_011512619.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X2XM_017006084.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X11XM_017006085.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X12XM_017006086.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X13XM_017006087.1:c.N/AGenic Downstream Transcript Variant
ZDHHC23 transcript variant X4XR_001740079.1:n.N/AIntron Variant
ZDHHC23 transcript variant X6XR_001740080.1:n.N/AIntron Variant
ZDHHC23 transcript variant X9XR_001740081.1:n.N/AIntron Variant
ZDHHC23 transcript variant X3XR_241479.3:n.N/AIntron Variant
ZDHHC23 transcript variant X6XR_924118.2:n.N/AIntron Variant
ZDHHC23 transcript variant X8XR_924119.1:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.356C=0.644
1000GenomesAmericanSub694T=0.450C=0.550
1000GenomesEast AsianSub1008T=0.423C=0.577
1000GenomesEuropeSub1006T=0.433C=0.567
1000GenomesGlobalStudy-wide5008T=0.423C=0.577
1000GenomesSouth AsianSub978T=0.480C=0.520
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.462C=0.538
The Genome Aggregation DatabaseAfricanSub8716T=0.368C=0.632
The Genome Aggregation DatabaseAmericanSub836T=0.490C=0.510
The Genome Aggregation DatabaseEast AsianSub1616T=0.416C=0.584
The Genome Aggregation DatabaseEuropeSub18466T=0.491C=0.508
The Genome Aggregation DatabaseGlobalStudy-wide29936T=0.450C=0.549
The Genome Aggregation DatabaseOtherSub302T=0.430C=0.570
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.418C=0.581
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.449C=0.551
PMID Title Author Journal
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)

P-Value

SNP ID p-value Traits Study
rs39031321.12E-05alcohol withdrawal symptoms22072270

eQTL of rs3903132 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3903132 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3113672599113672771E067-27955
chr3113672849113672934E067-27792
chr3113729626113729717E06728900
chr3113672849113672934E069-27792
chr3113673086113673260E069-27466
chr3113673086113673260E071-27466
chr3113672849113672934E073-27792
chr3113675566113675817E074-24909





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3113666119113667997E067-32729
chr3113666119113667997E068-32729
chr3113666119113667997E069-32729
chr3113666119113667997E070-32729
chr3113666119113667997E071-32729
chr3113666119113667997E072-32729
chr3113666119113667997E073-32729
chr3113666119113667997E074-32729
chr3113666119113667997E081-32729
chr3113666119113667997E082-32729