SNP Detail Info-rs3913141

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0464 (13888/29892,GnomAD)
G==0459 (13374/29118,TOPMED)
G==0429 (2146/5008,1000G)
G==0441 (1700/3854,ALSPAC)
G==0448 (1663/3708,TWINSUK)

Position: chr12:23040168 (GRCh38.p7) (12p12.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 12	NC_000012.12:g.23040168G>A
GRCh37.p13 chr 12	NC_000012.11:g.23193102G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.555	A=0.445
1000Genomes	American	Sub	694	G=0.370	A=0.630
1000Genomes	East Asian	Sub	1008	G=0.284	A=0.716
1000Genomes	Europe	Sub	1006	G=0.413	A=0.587
1000Genomes	Global	Study-wide	5008	G=0.429	A=0.571
1000Genomes	South Asian	Sub	978	G=0.460	A=0.540
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.441	A=0.559
The Genome Aggregation Database	African	Sub	8694	G=0.548	A=0.452
The Genome Aggregation Database	American	Sub	838	G=0.380	A=0.620
The Genome Aggregation Database	East Asian	Sub	1596	G=0.276	A=0.724
The Genome Aggregation Database	Europe	Sub	18462	G=0.447	A=0.552
The Genome Aggregation Database	Global	Study-wide	29892	G=0.464	A=0.535
The Genome Aggregation Database	Other	Sub	302	G=0.330	A=0.670
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.459	A=0.540
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.448	A=0.552

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs3913141	9.73E-05	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr12	23161400	23161536	E081	-31566
chr12	23161565	23162161	E081	-30941

rs3913141