rs3922799

Homo sapiens
G>A / G>T
None
Check p-value
SNV (Single Nucleotide Variation)
A=0419 (12524/29842,GnomAD)
A=0377 (10980/29118,TOPMED)
A=0366 (1831/5008,1000G)
A=0447 (1723/3854,ALSPAC)
A=0455 (1688/3708,TWINSUK)
chr2:139001336 (GRCh38.p7) (2q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
47 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.139001336G>A
GRCh38.p7 chr 2NC_000002.12:g.139001336G>T
GRCh37.p13 chr 2NC_000002.11:g.139758906G>A
GRCh37.p13 chr 2NC_000002.11:g.139758906G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.713A=0.287
1000GenomesAmericanSub694G=0.580A=0.420
1000GenomesEast AsianSub1008G=0.649A=0.351
1000GenomesEuropeSub1006G=0.585A=0.415
1000GenomesGlobalStudy-wide5008G=0.634A=0.366
1000GenomesSouth AsianSub978G=0.600A=0.400
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.553A=0.447
The Genome Aggregation DatabaseAfricanSub8708G=0.698A=0.302
The Genome Aggregation DatabaseAmericanSub834G=0.590A=0.410
The Genome Aggregation DatabaseEast AsianSub1568G=0.677A=0.323
The Genome Aggregation DatabaseEuropeSub18430G=0.516A=0.483
The Genome Aggregation DatabaseGlobalStudy-wide29842G=0.580A=0.419
The Genome Aggregation DatabaseOtherSub302G=0.530A=0.470
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.622A=0.377
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.545A=0.455
PMID Title Author Journal
21703634A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.Wang KSJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs39227996.48E-05alcohol dependence21703634

eQTL of rs3922799 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3922799 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2177618561177618850E0686268
chr2177643444177643494E06831151
chr2177643627177643761E06831334
chr2177574041177574208E069-38085
chr2177574289177574544E069-37749
chr2177568906177569311E070-42982
chr2177569353177569710E070-42583
chr2177574041177574208E070-38085
chr2177574289177574544E070-37749
chr2177574879177574929E070-37364
chr2177575185177575230E070-37063
chr2177610218177610320E070-1973
chr2177610565177610934E070-1359
chr2177628241177628441E07015948
chr2177628518177629331E07016225
chr2177629580177629694E07017287
chr2177655237177655304E07042944
chr2177655407177655538E07043114
chr2177658429177658473E07046136
chr2177658683177658820E07046390
chr2177659306177659356E07047013
chr2177618561177618850E0716268
chr2177574041177574208E072-38085
chr2177574289177574544E072-37749
chr2177574041177574208E073-38085
chr2177574041177574208E074-38085
chr2177574041177574208E081-38085
chr2177574289177574544E081-37749
chr2177574879177574929E081-37364
chr2177608437177608734E081-3559
chr2177610218177610320E081-1973
chr2177610565177610934E081-1359
chr2177611096177611477E081-816
chr2177611671177611729E081-564
chr2177611911177612030E081-263
chr2177612318177613009E08125
chr2177618561177618850E0816268
chr2177568906177569311E082-42982
chr2177610088177610147E082-2146
chr2177610218177610320E082-1973
chr2177610565177610934E082-1359
chr2177611096177611477E082-816
chr2177611671177611729E082-564
chr2177611911177612030E082-263
chr2177612318177613009E08225
chr2177628241177628441E08215948
chr2177628518177629331E08216225