SNP Detail Info-rs3925053

Organism: Homo sapiens

Alleles: A>G / A>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0075 (2277/29988,GnomAD)
A==0122 (3561/29108,TOPMED)
A==0088 (442/5008,1000G)

Position: chr12:69038840 (GRCh38.p7) (12q15)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.283	G=0.716
1000Genomes	American	Sub	694	A=0.040	G=0.96,
1000Genomes	East Asian	Sub	1008	A=0.006	G=0.994
1000Genomes	Europe	Sub	1006	A=0.000	G=0.988
1000Genomes	Global	Study-wide	5008	A=0.088	G=0.908
1000Genomes	South Asian	Sub	978	A=0.040	G=0.96,
The Genome Aggregation Database	African	Sub	8726	A=0.257	G=0.740
The Genome Aggregation Database	American	Sub	838	A=0.010	G=0.99,
The Genome Aggregation Database	East Asian	Sub	1622	A=0.002	G=0.998
The Genome Aggregation Database	Europe	Sub	18500	A=0.001	G=0.981
The Genome Aggregation Database	Global	Study-wide	29988	A=0.075	G=0.912
The Genome Aggregation Database	Other	Sub	302	A=0.010	G=0.99,
Trans-Omics for Precision Medicine	Global	Study-wide	29108	A=0.122	G=0.877

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs3925053	0.00041	alcohol dependence(early age of onset)	20201924
rs3925053	0.00088	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs3925053