rs3930234

Homo sapiens
T>C
LOC105374252 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0140 (4213/29950,GnomAD)
T==0156 (4549/29118,TOPMED)
T==0111 (555/5008,1000G)
T==0163 (628/3854,ALSPAC)
T==0165 (611/3708,TWINSUK)
chr3:184498342 (GRCh38.p7) (3q27.1)
AD
GWASdb2 | GWASCatalog
1   publication(s)
See rs on genome
7 Enhancers around
17 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.184498342T>C
GRCh37.p13 chr 3NC_000003.11:g.184216130T>C
GRCh38.p7 chr 3 alt locus HSCHR3_5_CTG2_1NT_187538.1:g.34997A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.144C=0.856
1000GenomesAmericanSub694T=0.090C=0.910
1000GenomesEast AsianSub1008T=0.022C=0.978
1000GenomesEuropeSub1006T=0.176C=0.824
1000GenomesGlobalStudy-wide5008T=0.111C=0.889
1000GenomesSouth AsianSub978T=0.100C=0.900
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.163C=0.837
The Genome Aggregation DatabaseAfricanSub8708T=0.147C=0.853
The Genome Aggregation DatabaseAmericanSub838T=0.090C=0.910
The Genome Aggregation DatabaseEast AsianSub1622T=0.021C=0.979
The Genome Aggregation DatabaseEuropeSub18480T=0.149C=0.850
The Genome Aggregation DatabaseGlobalStudy-wide29950T=0.140C=0.859
The Genome Aggregation DatabaseOtherSub302T=0.190C=0.810
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.156C=0.843
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.165C=0.835
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs39302340.000008alcoholism (alcohol use disorder factor score)21529783
rs39302348.00E-06alcohol dependence21529783

eQTL of rs3930234 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3930234 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3184182895184183563E067-32567
chr3184183759184184052E067-32078
chr3184184176184184760E067-31370
chr3184264104184264342E07147974
chr3184206722184206772E081-9358
chr3184207301184207576E081-8554
chr3184207714184207895E081-8235



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3184231235184232347E06715105
chr3184242867184244220E06726737
chr3184231235184232347E06815105
chr3184242867184244220E06926737
chr3184242867184244220E07026737
chr3184209919184210360E071-5770
chr3184210435184210525E071-5605
chr3184231235184232347E07115105
chr3184209919184210360E072-5770
chr3184231235184232347E07215105
chr3184242867184244220E07226737
chr3184209919184210360E073-5770
chr3184231235184232347E07315105
chr3184242867184244220E07326737
chr3184231235184232347E07415105
chr3184242867184244220E07426737
chr3184242867184244220E08226737