rs3930459

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0399 (11936/29912,GnomAD)
C=0368 (10737/29118,TOPMED)
C=0414 (2074/5008,1000G)
C=0392 (1509/3854,ALSPAC)
C=0392 (1455/3708,TWINSUK)
chr11:7932411 (GRCh38.p7) (11p15.4)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.7932411T>C
GRCh37.p13 chr 11NC_000011.9:g.7953958T>C
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2NW_011332695.1:g.163405T>C
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5NT_187583.1:g.163912T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.662C=0.338
1000GenomesAmericanSub694T=0.610C=0.390
1000GenomesEast AsianSub1008T=0.506C=0.494
1000GenomesEuropeSub1006T=0.575C=0.425
1000GenomesGlobalStudy-wide5008T=0.586C=0.414
1000GenomesSouth AsianSub978T=0.560C=0.440
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.608C=0.392
The Genome Aggregation DatabaseAfricanSub8708T=0.658C=0.342
The Genome Aggregation DatabaseAmericanSub838T=0.610C=0.390
The Genome Aggregation DatabaseEast AsianSub1614T=0.499C=0.501
The Genome Aggregation DatabaseEuropeSub18450T=0.583C=0.416
The Genome Aggregation DatabaseGlobalStudy-wide29912T=0.601C=0.399
The Genome Aggregation DatabaseOtherSub302T=0.500C=0.500
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.631C=0.368
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.608C=0.392
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs39304594.07E-05alcohol consumption23953852

eQTL of rs3930459 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3930459 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1179858687986265E07031910
chr1179858687986265E08231910


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1179492487949467E074-4491
chr1179494767949625E074-4333