rs3965782

Homo sapiens
G>A / G>C
ZFPM1 : Intron Variant
LOC107984890 : Non Coding Transcript Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0108 (3229/29906,GnomAD)
A=0094 (2742/29118,TOPMED)
A=0094 (472/5008,1000G)
A=0167 (645/3854,ALSPAC)
A=0167 (621/3708,TWINSUK)
chr16:88510386 (GRCh38.p7) (16q24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
191 Enhancers around
24 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.88510386G>A
GRCh38.p7 chr 16NC_000016.10:g.88510386G>C
GRCh37.p13 chr 16NC_000016.9:g.88576794G>A
GRCh37.p13 chr 16NC_000016.9:g.88576794G>C

Gene: ZFPM1, zinc finger protein, FOG family member 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZFPM1 transcriptNM_153813.2:c.N/AIntron Variant
ZFPM1 transcript variant X1XM_011522912.2:c.N/AIntron Variant
ZFPM1 transcript variant X2XM_011522914.2:c.N/AIntron Variant
ZFPM1 transcript variant X4XM_017022982.1:c.N/AIntron Variant
ZFPM1 transcript variant X3XM_011522917.2:c.N/AGenic Upstream Transcript Variant

Gene: LOC107984890, uncharacterized LOC107984890(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC107984890 transcriptXR_001752298.1:n....XR_001752298.1:n.895C>TC>TNon Coding Transcript Variant
LOC107984890 transcriptXR_001752298.1:n....XR_001752298.1:n.895C>GC>GNon Coding Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.992A=0.008
1000GenomesAmericanSub694G=0.920A=0.080
1000GenomesEast AsianSub1008G=0.829A=0.171
1000GenomesEuropeSub1006G=0.857A=0.143
1000GenomesGlobalStudy-wide5008G=0.906A=0.094
1000GenomesSouth AsianSub978G=0.910A=0.090
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.833A=0.167
The Genome Aggregation DatabaseAfricanSub8716G=0.973A=0.027
The Genome Aggregation DatabaseAmericanSub838G=0.900A=0.10,
The Genome Aggregation DatabaseEast AsianSub1614G=0.857A=0.143
The Genome Aggregation DatabaseEuropeSub18436G=0.856A=0.143
The Genome Aggregation DatabaseGlobalStudy-wide29906G=0.892A=0.108
The Genome Aggregation DatabaseOtherSub302G=0.890A=0.11,
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.905A=0.094
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.833A=0.167
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs39657820.00074alcohol dependence24277619

eQTL of rs3965782 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs3965782 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr167307628073076484E067-31287
chr167307668273076925E067-30846
chr167307699873077100E067-30671
chr167307722473077274E067-30497
chr167307751373077621E067-30150
chr167307762773078353E067-29418
chr167307836573078654E067-29117
chr167310164773101988E067-5783
chr167305893173060043E068-47728
chr167306517173065733E068-42038
chr167306574473065905E068-41866
chr167306593273066138E068-41633
chr167306614473067948E068-39823
chr167306805073068538E068-39233
chr167306855973068928E068-38843
chr167306966573069746E068-38025
chr167306983773071692E068-36079
chr167307174173072116E068-35655
chr167307216073072267E068-35504
chr167307398773074634E068-33137
chr167307617873076228E068-31543
chr167307628073076484E068-31287
chr167307668273076925E068-30846
chr167307699873077100E068-30671
chr167307722473077274E068-30497
chr167307751373077621E068-30150
chr167307762773078353E068-29418
chr167307836573078654E068-29117
chr167308000873080589E068-27182
chr167308352773083734E068-24037
chr167308386073085565E068-22206
chr167308556973085629E068-22142
chr167308585773086085E068-21686
chr167310164773101988E068-5783
chr167310203573103549E068-4222
chr167310356073103699E068-4072
chr167310382273103954E068-3817
chr167310404673104096E068-3675
chr167310587973106091E068-1680
chr167312622773126817E06818456
chr167312684273126913E06819071
chr167312694173127028E06819170
chr167312704773127249E06819276
chr167312728873127901E06819517
chr167305800273058042E069-49729
chr167305808673058132E069-49639
chr167305822873058444E069-49327
chr167305845773058525E069-49246
chr167305893173060043E069-47728
chr167306517173065733E069-42038
chr167306574473065905E069-41866
chr167306593273066138E069-41633
chr167306614473067948E069-39823
chr167307398773074634E069-33137
chr167307668273076925E069-30846
chr167307722473077274E069-30497
chr167307751373077621E069-30150
chr167307762773078353E069-29418
chr167307836573078654E069-29117
chr167307929173079377E069-28394
chr167310404673104096E069-3675
chr167310587973106091E069-1680
chr167312572573126190E06917954
chr167312622773126817E06918456
chr167312684273126913E06919071
chr167312694173127028E06919170
chr167312704773127249E06919276
chr167312728873127901E06919517
chr167305800273058042E070-49729
chr167305808673058132E070-49639
chr167305822873058444E070-49327
chr167305845773058525E070-49246
chr167305854873058632E070-49139
chr167305865673058839E070-48932
chr167306517173065733E070-42038
chr167306574473065905E070-41866
chr167306966573069746E070-38025
chr167306983773071692E070-36079
chr167307398773074634E070-33137
chr167307699873077100E070-30671
chr167307722473077274E070-30497
chr167308386073085565E070-22206
chr167308556973085629E070-22142
chr167308585773086085E070-21686
chr167310587973106091E070-1680
chr167312517473125347E07017403
chr167312704773127249E07019276
chr167312728873127901E07019517
chr167312920973129292E07021438
chr167312932573129416E07021554
chr167312949273129708E07021721
chr167312970973129911E07021938
chr167312993373130083E07022162
chr167313014073130267E07022369
chr167305786973057988E071-49783
chr167305800273058042E071-49729
chr167305808673058132E071-49639
chr167305822873058444E071-49327
chr167305845773058525E071-49246
chr167306805073068538E071-39233
chr167306855973068928E071-38843
chr167306966573069746E071-38025
chr167306983773071692E071-36079
chr167307174173072116E071-35655
chr167307216073072267E071-35504
chr167307226873072493E071-35278
chr167307376873073820E071-33951
chr167307398773074634E071-33137
chr167307628073076484E071-31287
chr167307668273076925E071-30846
chr167307699873077100E071-30671
chr167307722473077274E071-30497
chr167307751373077621E071-30150
chr167307762773078353E071-29418
chr167307836573078654E071-29117
chr167307887973079285E071-28486
chr167307929173079377E071-28394
chr167307938173079449E071-28322
chr167307984573079999E071-27772
chr167308352773083734E071-24037
chr167308386073085565E071-22206
chr167308556973085629E071-22142
chr167310164773101988E071-5783
chr167310203573103549E071-4222
chr167310356073103699E071-4072
chr167310382273103954E071-3817
chr167310404673104096E071-3675
chr167312572573126190E07117954
chr167312684273126913E07119071
chr167312694173127028E07119170
chr167315644273157497E07148671
chr167306574473065905E072-41866
chr167306855973068928E072-38843
chr167306928673069336E072-38435
chr167307668273076925E072-30846
chr167307699873077100E072-30671
chr167307722473077274E072-30497
chr167307751373077621E072-30150
chr167307984573079999E072-27772
chr167308000873080589E072-27182
chr167312517473125347E07217403
chr167312572573126190E07217954
chr167312622773126817E07218456
chr167305786973057988E073-49783
chr167305800273058042E073-49729
chr167305808673058132E073-49639
chr167305822873058444E073-49327
chr167305893173060043E073-47728
chr167306805073068538E073-39233
chr167307628073076484E073-31287
chr167307668273076925E073-30846
chr167307699873077100E073-30671
chr167308000873080589E073-27182
chr167310164773101988E073-5783
chr167310203573103549E073-4222
chr167310356073103699E073-4072
chr167315644273157497E07348671
chr167305865673058839E074-48932
chr167305893173060043E074-47728
chr167306805073068538E074-39233
chr167306855973068928E074-38843
chr167306928673069336E074-38435
chr167306966573069746E074-38025
chr167306983773071692E074-36079
chr167307628073076484E074-31287
chr167307668273076925E074-30846
chr167307699873077100E074-30671
chr167307722473077274E074-30497
chr167307751373077621E074-30150
chr167307762773078353E074-29418
chr167307836573078654E074-29117
chr167307887973079285E074-28486
chr167307929173079377E074-28394
chr167307938173079449E074-28322
chr167308352773083734E074-24037
chr167308386073085565E074-22206
chr167308556973085629E074-22142
chr167308585773086085E074-21686
chr167310164773101988E074-5783
chr167310587973106091E074-1680
chr167312517473125347E07417403
chr167312572573126190E07417954
chr167312622773126817E07418456
chr167312684273126913E07419071
chr167312694173127028E07419170
chr167312704773127249E07419276
chr167308000873080589E081-27182
chr167308556973085629E081-22142
chr167308585773086085E081-21686
chr167306517173065733E082-42038
chr167306574473065905E082-41866










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr167308060073083433E067-24338
chr167310418473104917E067-2854
chr167308060073083433E068-24338
chr167308610473093669E068-14102
chr167309941073100596E068-7175
chr167310418473104917E068-2854
chr167308060073083433E069-24338
chr167308610473093669E069-14102
chr167308060073083433E070-24338
chr167308610473093669E070-14102
chr167308060073083433E071-24338
chr167308610473093669E071-14102
chr167310418473104917E071-2854
chr167308060073083433E072-24338
chr167308610473093669E072-14102
chr167310418473104917E072-2854
chr167308060073083433E073-24338
chr167308610473093669E073-14102
chr167310418473104917E073-2854
chr167308060073083433E074-24338
chr167308610473093669E074-14102
chr167310418473104917E074-2854
chr167308610473093669E082-14102
chr167310418473104917E082-2854