SNP Detail Info-rs400196

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0191 (5726/29898,GnomAD)
A==0230 (6713/29118,TOPMED)
A==0266 (1334/5008,1000G)
A==0093 (357/3854,ALSPAC)
A==0100 (372/3708,TWINSUK)

Position: chr5:25717398 (GRCh38.p7) (5p14.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.25717398A>G
GRCh37.p13 chr 5	NC_000005.9:g.25717507A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.368	G=0.632
1000Genomes	American	Sub	694	A=0.260	G=0.740
1000Genomes	East Asian	Sub	1008	A=0.384	G=0.616
1000Genomes	Europe	Sub	1006	A=0.109	G=0.891
1000Genomes	Global	Study-wide	5008	A=0.266	G=0.734
1000Genomes	South Asian	Sub	978	A=0.170	G=0.830
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.093	G=0.907
The Genome Aggregation Database	African	Sub	8700	A=0.367	G=0.633
The Genome Aggregation Database	American	Sub	838	A=0.210	G=0.790
The Genome Aggregation Database	East Asian	Sub	1612	A=0.394	G=0.606
The Genome Aggregation Database	Europe	Sub	18448	A=0.091	G=0.909
The Genome Aggregation Database	Global	Study-wide	29898	A=0.191	G=0.808
The Genome Aggregation Database	Other	Sub	300	A=0.130	G=0.870
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.230	G=0.769
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.100	G=0.900

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs400196	0.0008	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs400196