SNP Detail Info-rs402608

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0118 (3558/29946,GnomAD)
G=0122 (3574/29118,TOPMED)
G=0092 (461/5008,1000G)
G=0176 (679/3854,ALSPAC)
G=0186 (688/3708,TWINSUK)

Position: chr7:125699264 (GRCh38.p7) (7q31.33)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.125699264A>G
GRCh37.p13 chr 7	NC_000007.13:g.125339318A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.911	G=0.089
1000Genomes	American	Sub	694	A=0.830	G=0.170
1000Genomes	East Asian	Sub	1008	A=0.995	G=0.005
1000Genomes	Europe	Sub	1006	A=0.844	G=0.156
1000Genomes	Global	Study-wide	5008	A=0.908	G=0.092
1000Genomes	South Asian	Sub	978	A=0.930	G=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.824	G=0.176
The Genome Aggregation Database	African	Sub	8716	A=0.912	G=0.088
The Genome Aggregation Database	American	Sub	838	A=0.860	G=0.140
The Genome Aggregation Database	East Asian	Sub	1620	A=0.988	G=0.012
The Genome Aggregation Database	Europe	Sub	18470	A=0.859	G=0.140
The Genome Aggregation Database	Global	Study-wide	29946	A=0.881	G=0.118
The Genome Aggregation Database	Other	Sub	302	A=0.830	G=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.877	G=0.122
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.814	G=0.186

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs402608	0.000982	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs402608