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rs4129566
Organism:
Homo sapiens
Alleles:
T>C
Gene : Feature
None
p-value:
Check p-value
Variation Type:
SNV (Single Nucleotide Variation)
Frequency:
C=0107 (3222/29966,GnomAD)
C=0112 (3286/29118,TOPMED)
C=0091 (458/5008,1000G)
C=0135 (520/3854,ALSPAC)
C=0144 (535/3708,TWINSUK)
Position:
chr4:173626006 (GRCh38.p7) (4q34.1)
Phenotype:
CD
Dataset:
GWASdb2 | GWASCatalog
Publications:
1 publication(s)
Genomic View:
See rs on genome
Enhancer:
0 Enhancer around
Promoter:
0 Promoter around
Variant Details
Frequency
Publications
p-values
eSNP
meSNP
Genomic Coordinates
Sequence Name
Change(s)
GRCh38.p7 chr 4
NC_000004.12:g.173626006T>C
GRCh37.p13 chr 4
NC_000004.11:g.174547157T>C
Population Frequency
Study
Population
Group
Sample #
Ref Allele
Alt Allele
1000Genomes
African
Sub
1322
T=0.900
C=0.100
1000Genomes
American
Sub
694
T=0.920
C=0.080
1000Genomes
East Asian
Sub
1008
T=0.995
C=0.005
1000Genomes
Europe
Sub
1006
T=0.861
C=0.139
1000Genomes
Global
Study-wide
5008
T=0.909
C=0.091
1000Genomes
South Asian
Sub
978
T=0.870
C=0.130
The Avon Longitudinal Study of Parents and Children
PARENT AND CHILD COHORT
Study-wide
3854
T=0.865
C=0.135
The Genome Aggregation Database
African
Sub
8728
T=0.905
C=0.095
The Genome Aggregation Database
American
Sub
838
T=0.920
C=0.080
The Genome Aggregation Database
East Asian
Sub
1620
T=0.993
C=0.007
The Genome Aggregation Database
Europe
Sub
18478
T=0.876
C=0.123
The Genome Aggregation Database
Global
Study-wide
29966
T=0.892
C=0.107
The Genome Aggregation Database
Other
Sub
302
T=0.890
C=0.110
Trans-Omics for Precision Medicine
Global
Study-wide
29118
T=0.887
C=0.112
UK 10K study - Twins
TWIN COHORT
Study-wide
3708
T=0.856
C=0.144
PMID
Title
Author
Journal
23958962
Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.
Gelernter J
Mol Psychiatry
P-Value
SNP ID
p-value
Traits
Study
rs4129566
3E-06
cocaine dependence
23958962
eQTL of rs4129566 in Brain tissues (GTEx Analysis Release V7)
Position (v37)
eGene
GeneID
Variant
p-value
TSS
Tissue
There is no eQTL annotation for this SNP
meQTL of rs4129566 in Fetal Brain
Probe ID
Position
Gene
beta
p-value
There is no meQTL annotation for this SNP
Genomic View
GRCh38.p7 chr 4(NC_000004.12:g.173626006T>C)
GRCh37.p13 chr 4(NC_000004.11:g.174547157T>C)
Chromatin Interaction
There is no significant Hi-C chromatin interaction data for this SNP.