rs41295800

Homo sapiens
delT
TF : Intron Variant
Check p-value
Indel (Insertion and Deletion)
None (
chr3:133765869-133765874 (GRCh38.p7) (3q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
67 Enhancers around
51 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.133765874delT
GRCh37.p13 chr 3NC_000003.11:g.133484718delT
TF RefSeqGeneNG_013080.1:g.24742delT

Gene: TF, transferrin(plus strand)

Molecule type Change Amino acid[Codon] SO Term
TF transcript variant 1NM_001063.3:c.N/AIntron Variant
TF transcript variant X1XM_017007089.1:c.N/AIntron Variant
TF transcript variant X2XM_017007090.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
21665994Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.Kutalik ZHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs412958002.05E-13alcohol consumption21665994

eQTL of rs41295800 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs41295800 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3133436424133436504E067-48214
chr3133461397133461916E067-22802
chr3133461945133462055E067-22663
chr3133464069133464119E067-20599
chr3133464448133464526E067-20192
chr3133482923133483028E067-1690
chr3133483054133483594E067-1124
chr3133483998133484070E067-648
chr3133436424133436504E068-48214
chr3133464069133464119E068-20599
chr3133482562133482616E068-2102
chr3133482923133483028E068-1690
chr3133483054133483594E068-1124
chr3133436424133436504E069-48214
chr3133461397133461916E069-22802
chr3133461945133462055E069-22663
chr3133464069133464119E069-20599
chr3133473014133473073E069-11645
chr3133473315133473659E069-11059
chr3133476260133476458E069-8260
chr3133482562133482616E069-2102
chr3133482923133483028E069-1690
chr3133483054133483594E069-1124
chr3133483998133484070E069-648
chr3133484337133484387E069-331
chr3133482923133483028E070-1690
chr3133483054133483594E070-1124
chr3133436424133436504E071-48214
chr3133461397133461916E071-22802
chr3133461945133462055E071-22663
chr3133464069133464119E071-20599
chr3133473014133473073E071-11645
chr3133473315133473659E071-11059
chr3133482562133482616E071-2102
chr3133482923133483028E071-1690
chr3133483054133483594E071-1124
chr3133483998133484070E071-648
chr3133484337133484387E071-331
chr3133461397133461916E072-22802
chr3133461945133462055E072-22663
chr3133464069133464119E072-20599
chr3133464448133464526E072-20192
chr3133473014133473073E072-11645
chr3133482923133483028E072-1690
chr3133483054133483594E072-1124
chr3133483998133484070E072-648
chr3133484337133484387E072-331
chr3133436424133436504E073-48214
chr3133461397133461916E073-22802
chr3133461945133462055E073-22663
chr3133464448133464526E073-20192
chr3133482923133483028E073-1690
chr3133483054133483594E073-1124
chr3133436424133436504E074-48214
chr3133461397133461916E074-22802
chr3133461945133462055E074-22663
chr3133464069133464119E074-20599
chr3133473014133473073E074-11645
chr3133473315133473659E074-11059
chr3133476260133476458E074-8260
chr3133482562133482616E074-2102
chr3133482923133483028E074-1690
chr3133483054133483594E074-1124
chr3133483998133484070E074-648
chr3133484337133484387E074-331
chr3133526132133526214E08141414
chr3133464448133464526E082-20192










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3133464975133465152E067-19566
chr3133465195133465439E067-19279
chr3133465691133465761E067-18957
chr3133468272133468322E067-16396
chr3133524082133525550E06739364
chr3133525588133525634E06740870
chr3133464975133465152E068-19566
chr3133465195133465439E068-19279
chr3133465691133465761E068-18957
chr3133468272133468322E068-16396
chr3133524082133525550E06839364
chr3133525588133525634E06840870
chr3133464975133465152E069-19566
chr3133465195133465439E069-19279
chr3133465691133465761E069-18957
chr3133468272133468322E069-16396
chr3133524082133525550E06939364
chr3133465195133465439E070-19279
chr3133524082133525550E07039364
chr3133525588133525634E07040870
chr3133464975133465152E071-19566
chr3133465195133465439E071-19279
chr3133465691133465761E071-18957
chr3133468272133468322E071-16396
chr3133524082133525550E07139364
chr3133525588133525634E07140870
chr3133464975133465152E072-19566
chr3133465195133465439E072-19279
chr3133465691133465761E072-18957
chr3133468272133468322E072-16396
chr3133524082133525550E07239364
chr3133525588133525634E07240870
chr3133464975133465152E073-19566
chr3133465195133465439E073-19279
chr3133465691133465761E073-18957
chr3133468272133468322E073-16396
chr3133524082133525550E07339364
chr3133525588133525634E07340870
chr3133464975133465152E074-19566
chr3133465195133465439E074-19279
chr3133465691133465761E074-18957
chr3133468272133468322E074-16396
chr3133524082133525550E07439364
chr3133525588133525634E07440870
chr3133464975133465152E081-19566
chr3133524082133525550E08139364
chr3133525588133525634E08140870
chr3133464975133465152E082-19566
chr3133465195133465439E082-19279
chr3133524082133525550E08239364
chr3133525588133525634E08240870