rs4132260

Homo sapiens
C>T
FUT9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0440 (12951/29414,GnomAD)
C==0477 (13900/29118,TOPMED)
C==0369 (1847/5008,1000G)
C==0410 (1580/3854,ALSPAC)
C==0427 (1585/3708,TWINSUK)
chr6:96147144 (GRCh38.p7) (6q16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
15 Enhancers around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.96147144C>T
GRCh37.p13 chr 6NC_000006.11:g.96595020C>T

Gene: FUT9, fucosyltransferase 9(plus strand)

Molecule type Change Amino acid[Codon] SO Term
FUT9 transcriptNM_006581.3:c.N/AIntron Variant
FUT9 transcript variant X1XM_011535383.2:c.N/AIntron Variant
FUT9 transcript variant X3XM_011535385.2:c.N/AIntron Variant
FUT9 transcript variant X2XM_017010188.1:c.N/AIntron Variant
FUT9 transcript variant X4XM_017010190.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.610T=0.390
1000GenomesAmericanSub694C=0.330T=0.670
1000GenomesEast AsianSub1008C=0.221T=0.779
1000GenomesEuropeSub1006C=0.369T=0.631
1000GenomesGlobalStudy-wide5008C=0.369T=0.631
1000GenomesSouth AsianSub978C=0.220T=0.780
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.410T=0.590
The Genome Aggregation DatabaseAfricanSub8590C=0.603T=0.397
The Genome Aggregation DatabaseAmericanSub822C=0.340T=0.660
The Genome Aggregation DatabaseEast AsianSub1614C=0.228T=0.772
The Genome Aggregation DatabaseEuropeSub18086C=0.388T=0.611
The Genome Aggregation DatabaseGlobalStudy-wide29414C=0.440T=0.559
The Genome Aggregation DatabaseOtherSub302C=0.310T=0.690
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.477T=0.522
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.427T=0.573
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs41322601.12E-05alcohol dependence23089632

eQTL of rs4132260 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4132260 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr69655430696554482E067-40538
chr69659830696598412E0673286
chr69661910896619543E06724088
chr69659830696598412E0683286
chr69660173596601835E0686715
chr69661040396610625E06815383
chr69659830696598412E0693286
chr69659925996599511E0694239
chr69660173596601835E0706715
chr69659830696598412E0713286
chr69661910896619543E07124088
chr69659830696598412E0723286
chr69657279796572891E073-22129
chr69661910896619543E07424088
chr69659830696598412E0813286









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr69660508296605172E06710062
chr69660508296605172E06810062