rs4134382

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0439 (13144/29902,GnomAD)
C=0452 (13171/29118,TOPMED)
T==0498 (2494/5008,1000G)
C=0409 (1576/3854,ALSPAC)
C=0402 (1490/3708,TWINSUK)
chr13:109304942 (GRCh38.p7) (13q33.3)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.109304942T>C
GRCh37.p13 chr 13NC_000013.10:g.109957290T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.509C=0.491
1000GenomesAmericanSub694T=0.560C=0.440
1000GenomesEast AsianSub1008T=0.409C=0.591
1000GenomesEuropeSub1006T=0.588C=0.412
1000GenomesGlobalStudy-wide5008T=0.498C=0.502
1000GenomesSouth AsianSub978T=0.440C=0.560
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.591C=0.409
The Genome Aggregation DatabaseAfricanSub8700T=0.545C=0.455
The Genome Aggregation DatabaseAmericanSub836T=0.540C=0.460
The Genome Aggregation DatabaseEast AsianSub1610T=0.396C=0.604
The Genome Aggregation DatabaseEuropeSub18454T=0.581C=0.418
The Genome Aggregation DatabaseGlobalStudy-wide29902T=0.560C=0.439
The Genome Aggregation DatabaseOtherSub302T=0.620C=0.380
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.547C=0.452
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.598C=0.402
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs41343820.000826alcohol dependence21314694

eQTL of rs4134382 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4134382 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13109927590109928219E081-29071
chr13109928260109928591E081-28699
chr13109933132109933215E081-24075