SNP Detail Info-rs4144333

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.33502351A>G
GRCh37.p13 chr 15	NC_000015.9:g.33794552A>G

Molecule type	Change	Amino acid[Codon]	SO Term
RYR3 transcript variant 1	NM_001036.4:c.	N/A	Intron Variant
RYR3 transcript variant 2	NM_001243996.2:c.	N/A	Intron Variant
RYR3 transcript variant X9	XM_011521880.2:c.	N/A	Intron Variant
RYR3 transcript variant X1	XM_017022468.1:c.	N/A	Intron Variant
RYR3 transcript variant X2	XM_017022469.1:c.	N/A	Intron Variant
RYR3 transcript variant X3	XM_017022470.1:c.	N/A	Intron Variant
RYR3 transcript variant X4	XM_017022471.1:c.	N/A	Intron Variant
RYR3 transcript variant X5	XM_017022472.1:c.	N/A	Intron Variant
RYR3 transcript variant X7	XM_017022473.1:c.	N/A	Intron Variant
RYR3 transcript variant X8	XM_017022474.1:c.	N/A	Intron Variant
RYR3 transcript variant X10	XM_017022475.1:c.	N/A	Intron Variant
RYR3 transcript variant X11	XM_017022476.1:c.	N/A	Intron Variant
RYR3 transcript variant X13	XM_017022477.1:c.	N/A	Intron Variant
RYR3 transcript variant X12	XR_001751369.1:n.	N/A	Intron Variant
RYR3 transcript variant X14	XR_001751370.1:n.	N/A	Intron Variant
RYR3 transcript variant X14	XR_001751371.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.596	G=0.404
1000Genomes	American	Sub	694	A=0.880	G=0.120
1000Genomes	East Asian	Sub	1008	A=0.714	G=0.286
1000Genomes	Europe	Sub	1006	A=0.855	G=0.145
1000Genomes	Global	Study-wide	5008	A=0.753	G=0.247
1000Genomes	South Asian	Sub	978	A=0.810	G=0.190
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.886	G=0.114
The Genome Aggregation Database	African	Sub	8716	A=0.633	G=0.367
The Genome Aggregation Database	American	Sub	834	A=0.880	G=0.120
The Genome Aggregation Database	East Asian	Sub	1616	A=0.689	G=0.311
The Genome Aggregation Database	Europe	Sub	18486	A=0.884	G=0.115
The Genome Aggregation Database	Global	Study-wide	29954	A=0.800	G=0.199
The Genome Aggregation Database	Other	Sub	302	A=0.810	G=0.190
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.758	G=0.241
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.878	G=0.122

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs4144333	1.96E-05	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	33745850	33745930	E067	-48622
chr15	33746084	33746181	E067	-48371
chr15	33746342	33746386	E067	-48166
chr15	33785216	33785332	E067	-9220
chr15	33746084	33746181	E068	-48371
chr15	33746342	33746386	E068	-48166
chr15	33746571	33746682	E068	-47870
chr15	33748848	33748962	E068	-45590
chr15	33760709	33760823	E068	-33729
chr15	33784802	33784902	E068	-9650
chr15	33784950	33785149	E068	-9403
chr15	33807495	33807578	E068	12943
chr15	33807781	33807860	E068	13229
chr15	33808160	33808242	E068	13608
chr15	33812945	33813036	E068	18393
chr15	33813470	33813520	E068	18918
chr15	33813853	33813893	E068	19301
chr15	33836275	33836388	E068	41723
chr15	33843244	33843331	E068	48692
chr15	33844021	33844061	E068	49469
chr15	33784802	33784902	E069	-9650
chr15	33784950	33785149	E069	-9403
chr15	33785216	33785332	E069	-9220
chr15	33798817	33799051	E070	4265
chr15	33799081	33799329	E070	4529
chr15	33844021	33844061	E070	49469
chr15	33760709	33760823	E071	-33729
chr15	33761097	33761258	E071	-33294
chr15	33784802	33784902	E071	-9650
chr15	33784802	33784902	E073	-9650
chr15	33784950	33785149	E073	-9403
chr15	33832568	33832650	E073	38016
chr15	33840122	33840548	E073	45570
chr15	33784950	33785149	E074	-9403
chr15	33785216	33785332	E074	-9220
chr15	33810228	33810493	E074	15676
chr15	33810745	33810855	E074	16193
chr15	33810972	33811236	E074	16420
chr15	33813470	33813520	E074	18918
chr15	33832568	33832650	E074	38016
chr15	33760709	33760823	E082	-33729
chr15	33761097	33761258	E082	-33294
chr15	33783422	33783628	E082	-10924

rs4144333