Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 16 | NC_000016.10:g.83725484T>C |
GRCh37.p13 chr 16 | NC_000016.9:g.83759089T>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
CDH13 transcript variant 2 | NM_001220488.1:c. | N/A | Intron Variant |
CDH13 transcript variant 3 | NM_001220489.1:c. | N/A | Intron Variant |
CDH13 transcript variant 4 | NM_001220490.1:c. | N/A | Intron Variant |
CDH13 transcript variant 1 | NM_001257.4:c. | N/A | Intron Variant |
CDH13 transcript variant 5 | NM_001220491.1:c. | N/A | Genic Downstream Transcript Variant |
CDH13 transcript variant 6 | NM_001220492.1:c. | N/A | Genic Downstream Transcript Variant |
CDH13 transcript variant X1 | XM_011522804.2:c. | N/A | Intron Variant |
CDH13 transcript variant X2 | XM_017022848.1:c. | N/A | Genic Downstream Transcript Variant |
CDH13 transcript variant X3 | XM_017022849.1:c. | N/A | Genic Downstream Transcript Variant |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC105371366 transcript variant X1 | XR_001752382.1:n....XR_001752382.1:n.237A>G | A>G | Non Coding Transcript Variant |
LOC105371366 transcript variant X3 | XR_933801.2:n.237A>G | A>G | Non Coding Transcript Variant |
LOC105371366 transcript variant X4 | XR_001752383.1:n. | N/A | Genic Upstream Transcript Variant |
LOC105371366 transcript variant X5 | XR_001752384.1:n. | N/A | Genic Upstream Transcript Variant |
LOC105371366 transcript variant X6 | XR_001752385.1:n. | N/A | Genic Upstream Transcript Variant |
LOC105371366 transcript variant X2 | XR_933802.2:n. | N/A | Genic Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.262 | C=0.738 |
1000Genomes | American | Sub | 694 | T=0.150 | C=0.850 |
1000Genomes | East Asian | Sub | 1008 | T=0.071 | C=0.929 |
1000Genomes | Europe | Sub | 1006 | T=0.199 | C=0.801 |
1000Genomes | Global | Study-wide | 5008 | T=0.171 | C=0.829 |
1000Genomes | South Asian | Sub | 978 | T=0.140 | C=0.860 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.187 | C=0.813 |
The Genome Aggregation Database | African | Sub | 8716 | T=0.232 | C=0.768 |
The Genome Aggregation Database | American | Sub | 838 | T=0.120 | C=0.880 |
The Genome Aggregation Database | East Asian | Sub | 1616 | T=0.056 | C=0.944 |
The Genome Aggregation Database | Europe | Sub | 18488 | T=0.188 | C=0.811 |
The Genome Aggregation Database | Global | Study-wide | 29960 | T=0.191 | C=0.808 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.190 | C=0.810 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.207 | C=0.792 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.181 | C=0.819 |
PMID | Title | Author | Journal |
---|---|---|---|
19268276 | Genome-wide association study of smoking initiation and current smoking. | Vink JM | Am J Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs419382 | 0.000103 | nicotine smoking | 19268276 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr16 | 83750967 | 83751185 | E067 | -7904 |
chr16 | 83751462 | 83751720 | E067 | -7369 |
chr16 | 83775440 | 83775534 | E067 | 16351 |
chr16 | 83777523 | 83777615 | E067 | 18434 |
chr16 | 83777721 | 83777775 | E067 | 18632 |
chr16 | 83777849 | 83777910 | E067 | 18760 |
chr16 | 83777944 | 83778613 | E067 | 18855 |
chr16 | 83778908 | 83778958 | E067 | 19819 |
chr16 | 83795181 | 83795288 | E067 | 36092 |
chr16 | 83795659 | 83796849 | E067 | 36570 |
chr16 | 83797534 | 83797628 | E067 | 38445 |
chr16 | 83797665 | 83797789 | E067 | 38576 |
chr16 | 83804305 | 83804365 | E067 | 45216 |
chr16 | 83804380 | 83804430 | E067 | 45291 |
chr16 | 83804581 | 83804641 | E067 | 45492 |
chr16 | 83804693 | 83804743 | E067 | 45604 |
chr16 | 83806656 | 83806988 | E067 | 47567 |
chr16 | 83807028 | 83807108 | E067 | 47939 |
chr16 | 83747988 | 83748129 | E068 | -10960 |
chr16 | 83748238 | 83748386 | E068 | -10703 |
chr16 | 83748524 | 83748590 | E068 | -10499 |
chr16 | 83750967 | 83751185 | E068 | -7904 |
chr16 | 83751246 | 83751357 | E068 | -7732 |
chr16 | 83751462 | 83751720 | E068 | -7369 |
chr16 | 83777523 | 83777615 | E068 | 18434 |
chr16 | 83777721 | 83777775 | E068 | 18632 |
chr16 | 83777944 | 83778613 | E068 | 18855 |
chr16 | 83778908 | 83778958 | E068 | 19819 |
chr16 | 83782467 | 83782507 | E068 | 23378 |
chr16 | 83782684 | 83782753 | E068 | 23595 |
chr16 | 83795659 | 83796849 | E068 | 36570 |
chr16 | 83802651 | 83803758 | E068 | 43562 |
chr16 | 83803814 | 83804108 | E068 | 44725 |
chr16 | 83804305 | 83804365 | E068 | 45216 |
chr16 | 83804380 | 83804430 | E068 | 45291 |
chr16 | 83806656 | 83806988 | E068 | 47567 |
chr16 | 83807028 | 83807108 | E068 | 47939 |
chr16 | 83807817 | 83807956 | E068 | 48728 |
chr16 | 83750967 | 83751185 | E069 | -7904 |
chr16 | 83751246 | 83751357 | E069 | -7732 |
chr16 | 83751462 | 83751720 | E069 | -7369 |
chr16 | 83774259 | 83774362 | E069 | 15170 |
chr16 | 83775440 | 83775534 | E069 | 16351 |
chr16 | 83777523 | 83777615 | E069 | 18434 |
chr16 | 83777721 | 83777775 | E069 | 18632 |
chr16 | 83777849 | 83777910 | E069 | 18760 |
chr16 | 83777944 | 83778613 | E069 | 18855 |
chr16 | 83778908 | 83778958 | E069 | 19819 |
chr16 | 83780716 | 83780766 | E069 | 21627 |
chr16 | 83781336 | 83781389 | E069 | 22247 |
chr16 | 83781671 | 83781891 | E069 | 22582 |
chr16 | 83782207 | 83782261 | E069 | 23118 |
chr16 | 83782467 | 83782507 | E069 | 23378 |
chr16 | 83794735 | 83794815 | E069 | 35646 |
chr16 | 83795181 | 83795288 | E069 | 36092 |
chr16 | 83795659 | 83796849 | E069 | 36570 |
chr16 | 83797534 | 83797628 | E069 | 38445 |
chr16 | 83797665 | 83797789 | E069 | 38576 |
chr16 | 83802651 | 83803758 | E069 | 43562 |
chr16 | 83803814 | 83804108 | E069 | 44725 |
chr16 | 83804305 | 83804365 | E069 | 45216 |
chr16 | 83804380 | 83804430 | E069 | 45291 |
chr16 | 83804581 | 83804641 | E069 | 45492 |
chr16 | 83804693 | 83804743 | E069 | 45604 |
chr16 | 83806656 | 83806988 | E069 | 47567 |
chr16 | 83807028 | 83807108 | E069 | 47939 |
chr16 | 83715419 | 83715499 | E070 | -43590 |
chr16 | 83715627 | 83715691 | E070 | -43398 |
chr16 | 83715820 | 83715991 | E070 | -43098 |
chr16 | 83716108 | 83716158 | E070 | -42931 |
chr16 | 83716258 | 83716446 | E070 | -42643 |
chr16 | 83716524 | 83716743 | E070 | -42346 |
chr16 | 83775767 | 83776142 | E070 | 16678 |
chr16 | 83747634 | 83747684 | E071 | -11405 |
chr16 | 83747988 | 83748129 | E071 | -10960 |
chr16 | 83748238 | 83748386 | E071 | -10703 |
chr16 | 83748524 | 83748590 | E071 | -10499 |
chr16 | 83750967 | 83751185 | E071 | -7904 |
chr16 | 83751462 | 83751720 | E071 | -7369 |
chr16 | 83774259 | 83774362 | E071 | 15170 |
chr16 | 83777523 | 83777615 | E071 | 18434 |
chr16 | 83777721 | 83777775 | E071 | 18632 |
chr16 | 83778908 | 83778958 | E071 | 19819 |
chr16 | 83781671 | 83781891 | E071 | 22582 |
chr16 | 83782207 | 83782261 | E071 | 23118 |
chr16 | 83782467 | 83782507 | E071 | 23378 |
chr16 | 83782684 | 83782753 | E071 | 23595 |
chr16 | 83794735 | 83794815 | E071 | 35646 |
chr16 | 83795181 | 83795288 | E071 | 36092 |
chr16 | 83797534 | 83797628 | E071 | 38445 |
chr16 | 83797665 | 83797789 | E071 | 38576 |
chr16 | 83798405 | 83798455 | E071 | 39316 |
chr16 | 83798806 | 83798856 | E071 | 39717 |
chr16 | 83799370 | 83799675 | E071 | 40281 |
chr16 | 83799802 | 83799842 | E071 | 40713 |
chr16 | 83800067 | 83800133 | E071 | 40978 |
chr16 | 83800392 | 83800491 | E071 | 41303 |
chr16 | 83802360 | 83802418 | E071 | 43271 |
chr16 | 83802651 | 83803758 | E071 | 43562 |
chr16 | 83806656 | 83806988 | E071 | 47567 |
chr16 | 83807028 | 83807108 | E071 | 47939 |
chr16 | 83807817 | 83807956 | E071 | 48728 |
chr16 | 83808793 | 83808853 | E071 | 49704 |
chr16 | 83722944 | 83723374 | E072 | -35715 |
chr16 | 83723430 | 83723502 | E072 | -35587 |
chr16 | 83750967 | 83751185 | E072 | -7904 |
chr16 | 83775767 | 83776142 | E072 | 16678 |
chr16 | 83776242 | 83776363 | E072 | 17153 |
chr16 | 83777523 | 83777615 | E072 | 18434 |
chr16 | 83777721 | 83777775 | E072 | 18632 |
chr16 | 83778908 | 83778958 | E072 | 19819 |
chr16 | 83782467 | 83782507 | E072 | 23378 |
chr16 | 83782684 | 83782753 | E072 | 23595 |
chr16 | 83794735 | 83794815 | E072 | 35646 |
chr16 | 83795181 | 83795288 | E072 | 36092 |
chr16 | 83795659 | 83796849 | E072 | 36570 |
chr16 | 83802651 | 83803758 | E072 | 43562 |
chr16 | 83803814 | 83804108 | E072 | 44725 |
chr16 | 83806656 | 83806988 | E072 | 47567 |
chr16 | 83807028 | 83807108 | E072 | 47939 |
chr16 | 83807817 | 83807956 | E072 | 48728 |
chr16 | 83775440 | 83775534 | E073 | 16351 |
chr16 | 83777523 | 83777615 | E073 | 18434 |
chr16 | 83777721 | 83777775 | E073 | 18632 |
chr16 | 83777849 | 83777910 | E073 | 18760 |
chr16 | 83777944 | 83778613 | E073 | 18855 |
chr16 | 83778908 | 83778958 | E073 | 19819 |
chr16 | 83795659 | 83796849 | E073 | 36570 |
chr16 | 83802651 | 83803758 | E073 | 43562 |
chr16 | 83804380 | 83804430 | E073 | 45291 |
chr16 | 83804581 | 83804641 | E073 | 45492 |
chr16 | 83804693 | 83804743 | E073 | 45604 |
chr16 | 83808793 | 83808853 | E073 | 49704 |
chr16 | 83750967 | 83751185 | E074 | -7904 |
chr16 | 83751246 | 83751357 | E074 | -7732 |
chr16 | 83751462 | 83751720 | E074 | -7369 |
chr16 | 83775440 | 83775534 | E074 | 16351 |
chr16 | 83775767 | 83776142 | E074 | 16678 |
chr16 | 83776242 | 83776363 | E074 | 17153 |
chr16 | 83776917 | 83777276 | E074 | 17828 |
chr16 | 83777523 | 83777615 | E074 | 18434 |
chr16 | 83777721 | 83777775 | E074 | 18632 |
chr16 | 83777849 | 83777910 | E074 | 18760 |
chr16 | 83777944 | 83778613 | E074 | 18855 |
chr16 | 83778908 | 83778958 | E074 | 19819 |
chr16 | 83781671 | 83781891 | E074 | 22582 |
chr16 | 83782207 | 83782261 | E074 | 23118 |
chr16 | 83782467 | 83782507 | E074 | 23378 |
chr16 | 83782684 | 83782753 | E074 | 23595 |
chr16 | 83794735 | 83794815 | E074 | 35646 |
chr16 | 83795181 | 83795288 | E074 | 36092 |
chr16 | 83797534 | 83797628 | E074 | 38445 |
chr16 | 83797665 | 83797789 | E074 | 38576 |
chr16 | 83798405 | 83798455 | E074 | 39316 |
chr16 | 83799370 | 83799675 | E074 | 40281 |
chr16 | 83799802 | 83799842 | E074 | 40713 |
chr16 | 83800067 | 83800133 | E074 | 40978 |
chr16 | 83802651 | 83803758 | E074 | 43562 |
chr16 | 83804305 | 83804365 | E074 | 45216 |
chr16 | 83804380 | 83804430 | E074 | 45291 |
chr16 | 83806656 | 83806988 | E074 | 47567 |
chr16 | 83807028 | 83807108 | E074 | 47939 |
chr16 | 83807817 | 83807956 | E074 | 48728 |
chr16 | 83709679 | 83710051 | E081 | -49038 |
chr16 | 83710094 | 83710168 | E081 | -48921 |
chr16 | 83775440 | 83775534 | E081 | 16351 |
chr16 | 83775767 | 83776142 | E081 | 16678 |
chr16 | 83776242 | 83776363 | E081 | 17153 |
chr16 | 83776917 | 83777276 | E081 | 17828 |
chr16 | 83777523 | 83777615 | E081 | 18434 |
chr16 | 83777721 | 83777775 | E081 | 18632 |
chr16 | 83777849 | 83777910 | E081 | 18760 |
chr16 | 83777944 | 83778613 | E081 | 18855 |
chr16 | 83778908 | 83778958 | E081 | 19819 |
chr16 | 83709679 | 83710051 | E082 | -49038 |
chr16 | 83710094 | 83710168 | E082 | -48921 |
chr16 | 83722944 | 83723374 | E082 | -35715 |
chr16 | 83748238 | 83748386 | E082 | -10703 |
chr16 | 83748524 | 83748590 | E082 | -10499 |
chr16 | 83771559 | 83771609 | E082 | 12470 |
chr16 | 83771706 | 83771934 | E082 | 12617 |
chr16 | 83775440 | 83775534 | E082 | 16351 |
chr16 | 83775767 | 83776142 | E082 | 16678 |
chr16 | 83776242 | 83776363 | E082 | 17153 |
chr16 | 83776917 | 83777276 | E082 | 17828 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr16 | 83805224 | 83805465 | E067 | 46135 |
chr16 | 83805659 | 83805739 | E067 | 46570 |
chr16 | 83805940 | 83806111 | E067 | 46851 |
chr16 | 83806150 | 83806200 | E067 | 47061 |
chr16 | 83806533 | 83806640 | E067 | 47444 |
chr16 | 83805224 | 83805465 | E068 | 46135 |
chr16 | 83805659 | 83805739 | E068 | 46570 |
chr16 | 83805940 | 83806111 | E068 | 46851 |
chr16 | 83806150 | 83806200 | E068 | 47061 |
chr16 | 83806533 | 83806640 | E068 | 47444 |
chr16 | 83805224 | 83805465 | E069 | 46135 |
chr16 | 83805659 | 83805739 | E069 | 46570 |
chr16 | 83805940 | 83806111 | E069 | 46851 |
chr16 | 83806150 | 83806200 | E069 | 47061 |
chr16 | 83806533 | 83806640 | E069 | 47444 |
chr16 | 83805224 | 83805465 | E071 | 46135 |
chr16 | 83805659 | 83805739 | E071 | 46570 |
chr16 | 83805940 | 83806111 | E071 | 46851 |
chr16 | 83806150 | 83806200 | E071 | 47061 |
chr16 | 83806533 | 83806640 | E071 | 47444 |
chr16 | 83805224 | 83805465 | E072 | 46135 |
chr16 | 83805659 | 83805739 | E072 | 46570 |
chr16 | 83805940 | 83806111 | E072 | 46851 |
chr16 | 83806150 | 83806200 | E072 | 47061 |
chr16 | 83805224 | 83805465 | E073 | 46135 |
chr16 | 83805659 | 83805739 | E073 | 46570 |
chr16 | 83805940 | 83806111 | E073 | 46851 |
chr16 | 83806150 | 83806200 | E073 | 47061 |
chr16 | 83805224 | 83805465 | E074 | 46135 |
chr16 | 83805659 | 83805739 | E074 | 46570 |
chr16 | 83805940 | 83806111 | E074 | 46851 |
chr16 | 83806150 | 83806200 | E074 | 47061 |
chr16 | 83806533 | 83806640 | E074 | 47444 |