rs4238521

Homo sapiens
A>G
ARNT2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A==0136 (4106/29984,GnomAD)
A==0147 (4280/29118,TOPMED)
A==0199 (999/5008,1000G)
A==0125 (481/3854,ALSPAC)
A==0127 (470/3708,TWINSUK)
chr15:80503787 (GRCh38.p7) (15q25.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.80503787A>G
GRCh37.p13 chr 15NC_000015.9:g.80796128A>G

Gene: ARNT2, aryl hydrocarbon receptor nuclear translocator 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ARNT2 transcriptNM_014862.3:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.129G=0.871
1000GenomesAmericanSub694A=0.290G=0.710
1000GenomesEast AsianSub1008A=0.203G=0.797
1000GenomesEuropeSub1006A=0.123G=0.877
1000GenomesGlobalStudy-wide5008A=0.199G=0.801
1000GenomesSouth AsianSub978A=0.310G=0.690
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.125G=0.875
The Genome Aggregation DatabaseAfricanSub8728A=0.138G=0.862
The Genome Aggregation DatabaseAmericanSub838A=0.270G=0.730
The Genome Aggregation DatabaseEast AsianSub1620A=0.214G=0.786
The Genome Aggregation DatabaseEuropeSub18496A=0.124G=0.875
The Genome Aggregation DatabaseGlobalStudy-wide29984A=0.136G=0.863
The Genome Aggregation DatabaseOtherSub302A=0.090G=0.910
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.147G=0.853
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.127G=0.873
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs42385210.000948alcohol dependence20201924

eQTL of rs4238521 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4238521 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr158074700080747071E067-49057
chr158074781480748587E067-47541
chr158074863180748848E067-47280
chr158074900080749129E067-46999
chr158074913480749430E067-46698
chr158074944880749817E067-46311
chr158075018480750264E067-45864
chr158075039280750484E067-45644
chr158075052680750576E067-45552
chr158075059380750663E067-45465
chr158075073680750826E067-45302
chr158075095180751047E067-45081
chr158075137080752276E067-43852
chr158075228680752557E067-43571
chr158075286380753028E067-43100
chr158076080180760851E067-35277
chr158076121180761646E067-34482
chr158076393280764524E067-31604
chr158076457580764798E067-31330
chr158076487580764925E067-31203
chr158076493680765020E067-31108
chr158076502380765111E067-31017
chr158076543980765545E067-30583
chr158076559680766471E067-29657
chr158076649880766958E067-29170
chr158077126480771318E067-24810
chr158077136580771940E067-24188
chr158077235680772422E067-23706
chr158077248680773805E067-22323
chr158077427580774334E067-21794
chr158077448780774553E067-21575
chr158077459980774652E067-21476
chr158077479380774843E067-21285
chr158077493980775028E067-21100
chr158077506980775384E067-20744
chr158077548480775576E067-20552
chr158077572380775773E067-20355
chr158077579280776517E067-19611
chr158077828480778352E067-17776
chr158077840480778540E067-17588
chr158077855080778632E067-17496
chr158077868680778758E067-17370
chr158078298380783033E067-13095
chr158078303780783175E067-12953
chr158078587480785970E067-10158
chr158078598680786123E067-10005
chr158078661280787428E067-8700
chr158078855280788674E067-7454
chr158078869180788745E067-7383
chr158078887380788925E067-7203
chr158078897380789013E067-7115
chr158078907180789128E067-7000
chr158078956380789846E067-6282
chr158079010680790156E067-5972
chr158079067180790725E067-5403
chr158079087680790976E067-5152
chr158079111680791344E067-4784
chr158079166180791711E067-4417
chr158079177380791823E067-4305
chr158079187480792041E067-4087
chr158079206380792143E067-3985
chr158079225680792306E067-3822
chr158079243280792840E067-3288
chr158079311180793324E067-2804
chr158079336580793455E067-2673
chr158079382180794198E067-1930
chr158079432880794389E067-1739
chr158079483780794938E067-1190
chr158079510480795154E067-974
chr158079522780795339E067-789
chr158079534180795481E067-647
chr158079551180796386E0670
chr158079640380796533E067275
chr158080423980804289E0678111
chr158080471480804938E0678586
chr158080512580805407E0678997
chr158080543080806040E0679302
chr158084198480842141E06745856
chr158084218380842332E06746055
chr158084236780843272E06746239
chr158074781480748587E068-47541
chr158074863180748848E068-47280
chr158074900080749129E068-46999
chr158074913480749430E068-46698
chr158074944880749817E068-46311
chr158075018480750264E068-45864
chr158075039280750484E068-45644
chr158075052680750576E068-45552
chr158075059380750663E068-45465
chr158075073680750826E068-45302
chr158075095180751047E068-45081
chr158075137080752276E068-43852
chr158075228680752557E068-43571
chr158075286380753028E068-43100
chr158075369780753741E068-42387
chr158075379580753933E068-42195
chr158075965580759899E068-36229
chr158075996680760069E068-36059
chr158076020080760317E068-35811
chr158076047280760526E068-35602
chr158076068780760737E068-35391
chr158076080180760851E068-35277
chr158076121180761646E068-34482
chr158076393280764524E068-31604
chr158076457580764798E068-31330
chr158076487580764925E068-31203
chr158076493680765020E068-31108
chr158076502380765111E068-31017
chr158076543980765545E068-30583
chr158076559680766471E068-29657
chr158076649880766958E068-29170
chr158077051380770730E068-25398
chr158077080380770874E068-25254
chr158077099380771130E068-24998
chr158077126480771318E068-24810
chr158077136580771940E068-24188
chr158077235680772422E068-23706
chr158077248680773805E068-22323
chr158077506980775384E068-20744
chr158077548480775576E068-20552
chr158077572380775773E068-20355
chr158077579280776517E068-19611
chr158077828480778352E068-17776
chr158077840480778540E068-17588
chr158077855080778632E068-17496
chr158077868680778758E068-17370
chr158077884480778919E068-17209
chr158077917380779223E068-16905
chr158077928180779331E068-16797
chr158077948780779537E068-16591
chr158078112480782197E068-13931
chr158078587480785970E068-10158
chr158078598680786123E068-10005
chr158078631080786580E068-9548
chr158078661280787428E068-8700
chr158078757980787666E068-8462
chr158078787280788047E068-8081
chr158078815080788419E068-7709
chr158078855280788674E068-7454
chr158078869180788745E068-7383
chr158078887380788925E068-7203
chr158078897380789013E068-7115
chr158078907180789128E068-7000
chr158079067180790725E068-5403
chr158079087680790976E068-5152
chr158079111680791344E068-4784
chr158079166180791711E068-4417
chr158079177380791823E068-4305
chr158079187480792041E068-4087
chr158079206380792143E068-3985
chr158079225680792306E068-3822
chr158079243280792840E068-3288
chr158079311180793324E068-2804
chr158079336580793455E068-2673
chr158079382180794198E068-1930
chr158079432880794389E068-1739
chr158079483780794938E068-1190
chr158079510480795154E068-974
chr158079522780795339E068-789
chr158079534180795481E068-647
chr158079551180796386E0680
chr158079873380798814E0682605
chr158079895980799018E0682831
chr158079934980800598E0683221
chr158080471480804938E0688586
chr158080512580805407E0688997
chr158080543080806040E0689302
chr158074751880747723E069-48405
chr158074781480748587E069-47541
chr158074863180748848E069-47280
chr158074900080749129E069-46999
chr158074913480749430E069-46698
chr158074944880749817E069-46311
chr158075018480750264E069-45864
chr158075039280750484E069-45644
chr158075052680750576E069-45552
chr158075059380750663E069-45465
chr158075073680750826E069-45302
chr158075095180751047E069-45081
chr158075137080752276E069-43852
chr158075228680752557E069-43571
chr158075286380753028E069-43100
chr158075369780753741E069-42387
chr158075379580753933E069-42195
chr158075418380754744E069-41384
chr158075864480758715E069-37413
chr158075952380759607E069-36521
chr158075965580759899E069-36229
chr158075996680760069E069-36059
chr158076080180760851E069-35277
chr158076393280764524E069-31604
chr158076457580764798E069-31330
chr158076487580764925E069-31203
chr158076493680765020E069-31108
chr158076502380765111E069-31017
chr158076543980765545E069-30583
chr158076559680766471E069-29657
chr158076649880766958E069-29170
chr158077126480771318E069-24810
chr158077136580771940E069-24188
chr158077235680772422E069-23706
chr158077248680773805E069-22323
chr158077579280776517E069-19611
chr158077828480778352E069-17776
chr158078231280782366E069-13762
chr158078241580782455E069-13673
chr158078247580782538E069-13590
chr158078257880782642E069-13486
chr158078661280787428E069-8700
chr158078787280788047E069-8081
chr158078815080788419E069-7709
chr158078855280788674E069-7454
chr158078869180788745E069-7383
chr158078887380788925E069-7203
chr158078897380789013E069-7115
chr158078907180789128E069-7000
chr158079067180790725E069-5403
chr158079087680790976E069-5152
chr158079111680791344E069-4784
chr158079166180791711E069-4417
chr158079177380791823E069-4305
chr158079187480792041E069-4087
chr158079206380792143E069-3985
chr158079225680792306E069-3822
chr158079243280792840E069-3288
chr158079311180793324E069-2804
chr158079336580793455E069-2673
chr158079382180794198E069-1930
chr158079432880794389E069-1739
chr158079483780794938E069-1190
chr158079510480795154E069-974
chr158079522780795339E069-789
chr158079534180795481E069-647
chr158079551180796386E0690
chr158079640380796533E069275
chr158079661080796670E069482
chr158080471480804938E0698586
chr158080512580805407E0698997
chr158080543080806040E0699302
chr158076068780760737E070-35391
chr158084328180843473E07047153
chr158074781480748587E071-47541
chr158074863180748848E071-47280
chr158074900080749129E071-46999
chr158074913480749430E071-46698
chr158074944880749817E071-46311
chr158075018480750264E071-45864
chr158075039280750484E071-45644
chr158075052680750576E071-45552
chr158075059380750663E071-45465
chr158075073680750826E071-45302
chr158075095180751047E071-45081
chr158075137080752276E071-43852
chr158075228680752557E071-43571
chr158075286380753028E071-43100
chr158075369780753741E071-42387
chr158075379580753933E071-42195
chr158075952380759607E071-36521
chr158075965580759899E071-36229
chr158075996680760069E071-36059
chr158076020080760317E071-35811
chr158076047280760526E071-35602
chr158076068780760737E071-35391
chr158076080180760851E071-35277
chr158076121180761646E071-34482
chr158076393280764524E071-31604
chr158076457580764798E071-31330
chr158076559680766471E071-29657
chr158076649880766958E071-29170
chr158077080380770874E071-25254
chr158077099380771130E071-24998
chr158077126480771318E071-24810
chr158077136580771940E071-24188
chr158077235680772422E071-23706
chr158077248680773805E071-22323
chr158077572380775773E071-20355
chr158077579280776517E071-19611
chr158077658580777185E071-18943
chr158078661280787428E071-8700
chr158078757980787666E071-8462
chr158078907180789128E071-7000
chr158079067180790725E071-5403
chr158079087680790976E071-5152
chr158079111680791344E071-4784
chr158079166180791711E071-4417
chr158079177380791823E071-4305
chr158079187480792041E071-4087
chr158079206380792143E071-3985
chr158079225680792306E071-3822
chr158079243280792840E071-3288
chr158079311180793324E071-2804
chr158079336580793455E071-2673
chr158079382180794198E071-1930
chr158079432880794389E071-1739
chr158079483780794938E071-1190
chr158079510480795154E071-974
chr158080471480804938E0718586
chr158080512580805407E0718997
chr158080543080806040E0719302
chr158082318780824054E07127059
chr158082417880824525E07128050
chr158074781480748587E072-47541
chr158074863180748848E072-47280
chr158074900080749129E072-46999
chr158074913480749430E072-46698
chr158074944880749817E072-46311
chr158075018480750264E072-45864
chr158075073680750826E072-45302
chr158075095180751047E072-45081
chr158075137080752276E072-43852
chr158075228680752557E072-43571
chr158075286380753028E072-43100
chr158075369780753741E072-42387
chr158075379580753933E072-42195
chr158075864480758715E072-37413
chr158075884280759116E072-37012
chr158075920380759280E072-36848
chr158075952380759607E072-36521
chr158075965580759899E072-36229
chr158075996680760069E072-36059
chr158076020080760317E072-35811
chr158076047280760526E072-35602
chr158076068780760737E072-35391
chr158076080180760851E072-35277
chr158076393280764524E072-31604
chr158076457580764798E072-31330
chr158076487580764925E072-31203
chr158076493680765020E072-31108
chr158076502380765111E072-31017
chr158076543980765545E072-30583
chr158076559680766471E072-29657
chr158076649880766958E072-29170
chr158077051380770730E072-25398
chr158077080380770874E072-25254
chr158077099380771130E072-24998
chr158077126480771318E072-24810
chr158077136580771940E072-24188
chr158077235680772422E072-23706
chr158077248680773805E072-22323
chr158077572380775773E072-20355
chr158077579280776517E072-19611
chr158077773380778132E072-17996
chr158077828480778352E072-17776
chr158078231280782366E072-13762
chr158078631080786580E072-9548
chr158078661280787428E072-8700
chr158078757980787666E072-8462
chr158078787280788047E072-8081
chr158078815080788419E072-7709
chr158078855280788674E072-7454
chr158078869180788745E072-7383
chr158078887380788925E072-7203
chr158078897380789013E072-7115
chr158078907180789128E072-7000
chr158078956380789846E072-6282
chr158079010680790156E072-5972
chr158079067180790725E072-5403
chr158079087680790976E072-5152
chr158079111680791344E072-4784
chr158079166180791711E072-4417
chr158079177380791823E072-4305
chr158079187480792041E072-4087
chr158079206380792143E072-3985
chr158079225680792306E072-3822
chr158079243280792840E072-3288
chr158079311180793324E072-2804
chr158079336580793455E072-2673
chr158079382180794198E072-1930
chr158079432880794389E072-1739
chr158079483780794938E072-1190
chr158079510480795154E072-974
chr158079534180795481E072-647
chr158079551180796386E0720
chr158079895980799018E0722831
chr158079934980800598E0723221
chr158080471480804938E0728586
chr158080512580805407E0728997
chr158080543080806040E0729302
chr158082318780824054E07227059
chr158082406480824139E07227936
chr158082417880824525E07228050
chr158082833880828388E07232210
chr158082842980828504E07232301
chr158082859880829453E07232470
chr158074645880746498E073-49630
chr158074653680746586E073-49542
chr158074665680746696E073-49432
chr158074781480748587E073-47541
chr158074863180748848E073-47280
chr158074900080749129E073-46999
chr158074913480749430E073-46698
chr158074944880749817E073-46311
chr158075018480750264E073-45864
chr158075039280750484E073-45644
chr158075137080752276E073-43852
chr158075228680752557E073-43571
chr158075286380753028E073-43100
chr158075369780753741E073-42387
chr158075379580753933E073-42195
chr158075643480756494E073-39634
chr158075795580758066E073-38062
chr158075810480758207E073-37921
chr158075835080758453E073-37675
chr158076068780760737E073-35391
chr158076080180760851E073-35277
chr158076393280764524E073-31604
chr158076457580764798E073-31330
chr158076487580764925E073-31203
chr158076493680765020E073-31108
chr158076502380765111E073-31017
chr158076543980765545E073-30583
chr158076559680766471E073-29657
chr158076649880766958E073-29170
chr158077126480771318E073-24810
chr158077136580771940E073-24188
chr158077235680772422E073-23706
chr158077248680773805E073-22323
chr158077427580774334E073-21794
chr158077448780774553E073-21575
chr158077459980774652E073-21476
chr158077479380774843E073-21285
chr158077493980775028E073-21100
chr158077506980775384E073-20744
chr158077548480775576E073-20552
chr158077572380775773E073-20355
chr158077579280776517E073-19611
chr158077658580777185E073-18943
chr158077726780777317E073-18811
chr158077773380778132E073-17996
chr158077828480778352E073-17776
chr158077840480778540E073-17588
chr158077855080778632E073-17496
chr158077868680778758E073-17370
chr158077978980779882E073-16246
chr158078006480780114E073-16014
chr158078036680780552E073-15576
chr158078065580780705E073-15423
chr158078072380780775E073-15353
chr158078231280782366E073-13762
chr158078241580782455E073-13673
chr158078247580782538E073-13590
chr158078257880782642E073-13486
chr158078265080782721E073-13407
chr158078274180782801E073-13327
chr158078631080786580E073-9548
chr158078661280787428E073-8700
chr158078757980787666E073-8462
chr158078787280788047E073-8081
chr158078815080788419E073-7709
chr158078855280788674E073-7454
chr158078869180788745E073-7383
chr158078887380788925E073-7203
chr158078897380789013E073-7115
chr158078907180789128E073-7000
chr158079177380791823E073-4305
chr158079187480792041E073-4087
chr158079206380792143E073-3985
chr158079225680792306E073-3822
chr158079432880794389E073-1739
chr158079483780794938E073-1190
chr158079510480795154E073-974
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