Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 17 | NC_000017.11:g.9749551T>C |
GRCh37.p13 chr 17 | NC_000017.10:g.9652868T>C |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.287 | C=0.713 |
1000Genomes | American | Sub | 694 | T=0.100 | C=0.900 |
1000Genomes | East Asian | Sub | 1008 | T=0.288 | C=0.712 |
1000Genomes | Europe | Sub | 1006 | T=0.058 | C=0.942 |
1000Genomes | Global | Study-wide | 5008 | T=0.184 | C=0.816 |
1000Genomes | South Asian | Sub | 978 | T=0.130 | C=0.870 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.049 | C=0.951 |
The Genome Aggregation Database | African | Sub | 8722 | T=0.242 | C=0.758 |
The Genome Aggregation Database | American | Sub | 838 | T=0.100 | C=0.900 |
The Genome Aggregation Database | East Asian | Sub | 1616 | T=0.329 | C=0.671 |
The Genome Aggregation Database | Europe | Sub | 18500 | T=0.056 | C=0.943 |
The Genome Aggregation Database | Global | Study-wide | 29978 | T=0.126 | C=0.873 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.050 | C=0.950 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.143 | C=0.857 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.045 | C=0.955 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs424508 | 0.000877 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr17 | 9628884 | 9628968 | E067 | -23900 |
chr17 | 9628969 | 9629215 | E067 | -23653 |
chr17 | 9629539 | 9629686 | E067 | -23182 |
chr17 | 9628969 | 9629215 | E068 | -23653 |
chr17 | 9629539 | 9629686 | E068 | -23182 |
chr17 | 9628884 | 9628968 | E069 | -23900 |
chr17 | 9628969 | 9629215 | E069 | -23653 |
chr17 | 9628884 | 9628968 | E070 | -23900 |
chr17 | 9628969 | 9629215 | E070 | -23653 |
chr17 | 9628884 | 9628968 | E071 | -23900 |
chr17 | 9628969 | 9629215 | E071 | -23653 |
chr17 | 9629539 | 9629686 | E071 | -23182 |
chr17 | 9629950 | 9630072 | E071 | -22796 |
chr17 | 9628884 | 9628968 | E072 | -23900 |
chr17 | 9628969 | 9629215 | E072 | -23653 |
chr17 | 9628884 | 9628968 | E073 | -23900 |
chr17 | 9628969 | 9629215 | E073 | -23653 |
chr17 | 9629539 | 9629686 | E073 | -23182 |
chr17 | 9628884 | 9628968 | E074 | -23900 |
chr17 | 9628969 | 9629215 | E074 | -23653 |
chr17 | 9629539 | 9629686 | E074 | -23182 |
chr17 | 9628884 | 9628968 | E081 | -23900 |
chr17 | 9679593 | 9679665 | E081 | 26725 |
chr17 | 9680084 | 9680134 | E081 | 27216 |
chr17 | 9680142 | 9680836 | E081 | 27274 |
chr17 | 9695746 | 9695812 | E081 | 42878 |
chr17 | 9695899 | 9696033 | E081 | 43031 |