SNP Detail Info-rs4267900

Organism: Homo sapiens

Alleles: C>A

Gene : Feature

LOC102467224 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0246 (7383/29908,GnomAD)
A=0308 (8982/29118,TOPMED)
A=0217 (1089/5008,1000G)
A=0239 (923/3854,ALSPAC)
A=0256 (948/3708,TWINSUK)

Position: chr5:118119334 (GRCh38.p7) (5q23.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.118119334C>A
GRCh37.p13 chr 5	NC_000005.9:g.117455029C>A

Molecule type	Change	Amino acid[Codon]	SO Term
LINC02147 transcript	NR_104997.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.576	A=0.424
1000Genomes	American	Sub	694	C=0.800	A=0.200
1000Genomes	East Asian	Sub	1008	C=0.986	A=0.014
1000Genomes	Europe	Sub	1006	C=0.771	A=0.229
1000Genomes	Global	Study-wide	5008	C=0.783	A=0.217
1000Genomes	South Asian	Sub	978	C=0.850	A=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.761	A=0.239
The Genome Aggregation Database	African	Sub	8704	C=0.615	A=0.385
The Genome Aggregation Database	American	Sub	838	C=0.820	A=0.180
The Genome Aggregation Database	East Asian	Sub	1608	C=0.988	A=0.012
The Genome Aggregation Database	Europe	Sub	18458	C=0.794	A=0.205
The Genome Aggregation Database	Global	Study-wide	29908	C=0.753	A=0.246
The Genome Aggregation Database	Other	Sub	300	C=0.770	A=0.230
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.691	A=0.308
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.744	A=0.256

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs4267900	0.000687	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs4267900