rs4281802

Homo sapiens
T>C
OSBPL1A : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0068 (2054/29960,GnomAD)
T==0077 (2268/29118,TOPMED)
T==0106 (530/5008,1000G)
T==0028 (106/3854,ALSPAC)
T==0028 (102/3708,TWINSUK)
chr18:24226736 (GRCh38.p7) (18q11.2)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.24226736T>C
GRCh37.p13 chr 18NC_000018.9:g.21806700T>C
OSBPL1A RefSeqGeneNG_029432.1:g.176134A>G

Gene: OSBPL1A, oxysterol binding protein like 1A(minus strand)

Molecule type Change Amino acid[Codon] SO Term
OSBPL1A transcript variant 3NM_001242508.1:c.N/AIntron Variant
OSBPL1A transcript variant 1NM_018030.4:c.N/AIntron Variant
OSBPL1A transcript variant 2NM_080597.3:c.N/AIntron Variant
OSBPL1A transcript variant X2XM_006722380.3:c.N/AIntron Variant
OSBPL1A transcript variant X4XM_006722382.3:c.N/AIntron Variant
OSBPL1A transcript variant X1XM_017025530.1:c.N/AIntron Variant
OSBPL1A transcript variant X3XM_017025531.1:c.N/AIntron Variant
OSBPL1A transcript variant X8XM_017025533.1:c.N/AIntron Variant
OSBPL1A transcript variant X9XM_017025534.1:c.N/AIntron Variant
OSBPL1A transcript variant X7XM_017025532.1:c.N/AGenic Downstream Transcript Variant
OSBPL1A transcript variant X5XR_001753139.1:n.N/AIntron Variant
OSBPL1A transcript variant X6XR_001753140.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.129C=0.871
1000GenomesAmericanSub694T=0.070C=0.930
1000GenomesEast AsianSub1008T=0.229C=0.771
1000GenomesEuropeSub1006T=0.031C=0.969
1000GenomesGlobalStudy-wide5008T=0.106C=0.894
1000GenomesSouth AsianSub978T=0.050C=0.950
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.028C=0.972
The Genome Aggregation DatabaseAfricanSub8716T=0.108C=0.892
The Genome Aggregation DatabaseAmericanSub838T=0.060C=0.940
The Genome Aggregation DatabaseEast AsianSub1614T=0.234C=0.766
The Genome Aggregation DatabaseEuropeSub18490T=0.036C=0.963
The Genome Aggregation DatabaseGlobalStudy-wide29960T=0.068C=0.931
The Genome Aggregation DatabaseOtherSub302T=0.030C=0.970
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.077C=0.922
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.028C=0.972
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs42818020.000527alcohol dependence21314694

eQTL of rs4281802 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4281802 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr182175706321757159E067-49541
chr182175722821757497E067-49203
chr182175758821757703E067-48997
chr182175782921757879E067-48821
chr182175795121758018E067-48682
chr182175969821759988E067-46712
chr182176099921761128E067-45572
chr182176114421761194E067-45506
chr182176140321761460E067-45240
chr182176168621762064E067-44636
chr182176757321767625E067-39075
chr182176769521767739E067-38961
chr182176783921767889E067-38811
chr182176789321767970E067-38730
chr182176821321768263E067-38437
chr182176830521768371E067-38329
chr182176852921768579E067-38121
chr182176874421769475E067-37225
chr182176963721769681E067-37019
chr182176985821769916E067-36784
chr182177002521770248E067-36452
chr182177045521771340E067-35360
chr182177678521776841E067-29859
chr182177688721776956E067-29744
chr182177811721778180E067-28520
chr182177852321778633E067-28067
chr182177867721778840E067-27860
chr182177936821779593E067-27107
chr182177965821779863E067-26837
chr182178108521781283E067-25417
chr182178133421781405E067-25295
chr182178186221781984E067-24716
chr182178206221782148E067-24552
chr182178218421782283E067-24417
chr182178237621782491E067-24209
chr182178287521782939E067-23761
chr182178409721784168E067-22532
chr182178439321784518E067-22182
chr182178946321789563E067-17137
chr182178968221789883E067-16817
chr182179395721794052E067-12648
chr182179411921794416E067-12284
chr182179444221794521E067-12179
chr182179471121794876E067-11824
chr182179491321795868E067-10832
chr182179589121796212E067-10488
chr182179968121799854E067-6846
chr182179988721799940E067-6760
chr182180002721800202E067-6498
chr182180024621800344E067-6356
chr182180034821800554E067-6146
chr182180082421800874E067-5826
chr182180785521807905E0671155
chr182180801121808232E0671311
chr182180825221808901E0671552
chr182180902721809137E0672327
chr182180924521809432E0672545
chr182180957221809628E0672872
chr182181276521813105E0676065
chr182181318021813249E0676480
chr182181814921818203E06711449
chr182181850421818619E06711804
chr182181882621818895E06712126
chr182182360721823693E06716907
chr182182378821823880E06717088
chr182182451821824750E06717818
chr182184041521840489E06733715
chr182184125321841488E06734553
chr182184149321841583E06734793
chr182184158621841781E06734886
chr182184185621841927E06735156
chr182184215121842351E06735451
chr182184247121842521E06735771
chr182184287721843337E06736177
chr182184343721843487E06736737
chr182184378721843851E06737087
chr182184421721844271E06737517
chr182184444721844497E06737747
chr182184472821844794E06738028
chr182184536121845427E06738661
chr182184627321846408E06739573
chr182184668921846739E06739989
chr182185537021855441E06748670
chr182175969821759988E068-46712
chr182176014021760333E068-46367
chr182176757321767625E068-39075
chr182176769521767739E068-38961
chr182176783921767889E068-38811
chr182176789321767970E068-38730
chr182176821321768263E068-38437
chr182176830521768371E068-38329
chr182176852921768579E068-38121
chr182176874421769475E068-37225
chr182176963721769681E068-37019
chr182176985821769916E068-36784
chr182177002521770248E068-36452
chr182177045521771340E068-35360
chr182177678521776841E068-29859
chr182177688721776956E068-29744
chr182177811721778180E068-28520
chr182177852321778633E068-28067
chr182177867721778840E068-27860
chr182177936821779593E068-27107
chr182177965821779863E068-26837
chr182178087921781055E068-25645
chr182178108521781283E068-25417
chr182178133421781405E068-25295
chr182178186221781984E068-24716
chr182178206221782148E068-24552
chr182178218421782283E068-24417
chr182178237621782491E068-24209
chr182178317021783234E068-23466
chr182178833221788994E068-17706
chr182178968221789883E068-16817
chr182179395721794052E068-12648
chr182179411921794416E068-12284
chr182179444221794521E068-12179
chr182179471121794876E068-11824
chr182179491321795868E068-10832
chr182179589121796212E068-10488
chr182179968121799854E068-6846
chr182179988721799940E068-6760
chr182180002721800202E068-6498
chr182180024621800344E068-6356
chr182180034821800554E068-6146
chr182181148621811568E0684786
chr182181161321812650E0684913
chr182181882621818895E06812126
chr182181915821819232E06812458
chr182182245321822573E06815753
chr182182360721823693E06816907
chr182182378821823880E06817088
chr182182973321829811E06823033
chr182182986121829960E06823161
chr182182997621830036E06823276
chr182184125321841488E06834553
chr182184149321841583E06834793
chr182184158621841781E06834886
chr182184185621841927E06835156
chr182184215121842351E06835451
chr182184247121842521E06835771
chr182184287721843337E06836177
chr182184343721843487E06836737
chr182184378721843851E06837087
chr182184421721844271E06837517
chr182184444721844497E06837747
chr182184472821844794E06838028
chr182184553721845748E06838837
chr182184578621845873E06839086
chr182184594921846099E06839249
chr182184627321846408E06839573
chr182175706321757159E069-49541
chr182175722821757497E069-49203
chr182175758821757703E069-48997
chr182176014021760333E069-46367
chr182176099921761128E069-45572
chr182176114421761194E069-45506
chr182176140321761460E069-45240
chr182176757321767625E069-39075
chr182176769521767739E069-38961
chr182176783921767889E069-38811
chr182176789321767970E069-38730
chr182176821321768263E069-38437
chr182176830521768371E069-38329
chr182176852921768579E069-38121
chr182176874421769475E069-37225
chr182176963721769681E069-37019
chr182176985821769916E069-36784
chr182177002521770248E069-36452
chr182177852321778633E069-28067
chr182177867721778840E069-27860
chr182177936821779593E069-27107
chr182177965821779863E069-26837
chr182178087921781055E069-25645
chr182178108521781283E069-25417
chr182178133421781405E069-25295
chr182178186221781984E069-24716
chr182178206221782148E069-24552
chr182178218421782283E069-24417
chr182178237621782491E069-24209
chr182178287521782939E069-23761
chr182178298321783097E069-23603
chr182178317021783234E069-23466
chr182178409721784168E069-22532
chr182178439321784518E069-22182
chr182178464421784698E069-22002
chr182178833221788994E069-17706
chr182178904921789146E069-17554
chr182178946321789563E069-17137
chr182178968221789883E069-16817
chr182179395721794052E069-12648
chr182179411921794416E069-12284
chr182179444221794521E069-12179
chr182179471121794876E069-11824
chr182179491321795868E069-10832
chr182179589121796212E069-10488
chr182179968121799854E069-6846
chr182179988721799940E069-6760
chr182180002721800202E069-6498
chr182180024621800344E069-6356
chr182180034821800554E069-6146
chr182180384921803929E069-2771
chr182180801121808232E0691311
chr182180825221808901E0691552
chr182181148621811568E0694786
chr182181161321812650E0694913
chr182181276521813105E0696065
chr182181318021813249E0696480
chr182181348321813605E0696783
chr182181850421818619E06911804
chr182181882621818895E06912126
chr182181915821819232E06912458
chr182182360721823693E06916907
chr182182378821823880E06917088
chr182183339421833494E06926694
chr182183350421833691E06926804
chr182184125321841488E06934553
chr182184149321841583E06934793
chr182184158621841781E06934886
chr182184185621841927E06935156
chr182184247121842521E06935771
chr182184287721843337E06936177
chr182184421721844271E06937517
chr182184444721844497E06937747
chr182184472821844794E06938028
chr182184536121845427E06938661
chr182184553721845748E06938837
chr182184578621845873E06939086
chr182184627321846408E06939573
chr182184871721849157E06942017
chr182180002721800202E070-6498
chr182180024621800344E070-6356
chr182180034821800554E070-6146
chr182175706321757159E071-49541
chr182175722821757497E071-49203
chr182175758821757703E071-48997
chr182175782921757879E071-48821
chr182175795121758018E071-48682
chr182175969821759988E071-46712
chr182176114421761194E071-45506
chr182176140321761460E071-45240
chr182176168621762064E071-44636
chr182176757321767625E071-39075
chr182176769521767739E071-38961
chr182176783921767889E071-38811
chr182176789321767970E071-38730
chr182176821321768263E071-38437
chr182176830521768371E071-38329
chr182176852921768579E071-38121
chr182176874421769475E071-37225
chr182176963721769681E071-37019
chr182176985821769916E071-36784
chr182177002521770248E071-36452
chr182177045521771340E071-35360
chr182177135321771425E071-35275
chr182177678521776841E071-29859
chr182177688721776956E071-29744
chr182177852321778633E071-28067
chr182177867721778840E071-27860
chr182177936821779593E071-27107
chr182177965821779863E071-26837
chr182178056121780769E071-25931
chr182178077421780865E071-25835
chr182178087921781055E071-25645
chr182178108521781283E071-25417
chr182178133421781405E071-25295
chr182178186221781984E071-24716
chr182178206221782148E071-24552
chr182178218421782283E071-24417
chr182178237621782491E071-24209
chr182178287521782939E071-23761
chr182178298321783097E071-23603
chr182178317021783234E071-23466
chr182178409721784168E071-22532
chr182178439321784518E071-22182
chr182178464421784698E071-22002
chr182178833221788994E071-17706
chr182178904921789146E071-17554
chr182178946321789563E071-17137
chr182178968221789883E071-16817
chr182179395721794052E071-12648
chr182179411921794416E071-12284
chr182179444221794521E071-12179
chr182179471121794876E071-11824
chr182179491321795868E071-10832
chr182179589121796212E071-10488
chr182179968121799854E071-6846
chr182179988721799940E071-6760
chr182180002721800202E071-6498
chr182180024621800344E071-6356
chr182180034821800554E071-6146
chr182180082421800874E071-5826
chr182180384921803929E071-2771
chr182180478821804838E071-1862
chr182180513621805278E071-1422
chr182180801121808232E0711311
chr182180825221808901E0711552
chr182181161321812650E0714913
chr182181276521813105E0716065
chr182181318021813249E0716480
chr182181882621818895E07112126
chr182181915821819232E07112458
chr182182245321822573E07115753
chr182182278121822848E07116081
chr182182973321829811E07123033
chr182182986121829960E07123161
chr182182997621830036E07123276
chr182183317821833228E07126478
chr182183339421833494E07126694
chr182183350421833691E07126804
chr182183811121838161E07131411
chr182184125321841488E07134553
chr182184149321841583E07134793
chr182184158621841781E07134886
chr182184185621841927E07135156
chr182184215121842351E07135451
chr182184247121842521E07135771
chr182184287721843337E07136177
chr182184343721843487E07136737
chr182184378721843851E07137087
chr182184421721844271E07137517
chr182184444721844497E07137747
chr182184472821844794E07138028
chr182184536121845427E07138661
chr182184553721845748E07138837
chr182184578621845873E07139086
chr182184594921846099E07139249
chr182184627321846408E07139573
chr182184871721849157E07142017
chr182175706321757159E072-49541
chr182175722821757497E072-49203
chr182175758821757703E072-48997
chr182175782921757879E072-48821
chr182175795121758018E072-48682
chr182176757321767625E072-39075
chr182176769521767739E072-38961
chr182176783921767889E072-38811
chr182176789321767970E072-38730
chr182176874421769475E072-37225
chr182176963721769681E072-37019
chr182176985821769916E072-36784
chr182177002521770248E072-36452
chr182177045521771340E072-35360
chr182177135321771425E072-35275
chr182177198921772054E072-34646
chr182177206221772201E072-34499
chr182177225821772419E072-34281
chr182177678521776841E072-29859
chr182177688721776956E072-29744
chr182177811721778180E072-28520
chr182177852321778633E072-28067
chr182177867721778840E072-27860
chr182177936821779593E072-27107
chr182177965821779863E072-26837
chr182178087921781055E072-25645
chr182178108521781283E072-25417
chr182178133421781405E072-25295
chr182178186221781984E072-24716
chr182178206221782148E072-24552
chr182178218421782283E072-24417
chr182178237621782491E072-24209
chr182178287521782939E072-23761
chr182178298321783097E072-23603
chr182178317021783234E072-23466
chr182178409721784168E072-22532
chr182178946321789563E072-17137
chr182178968221789883E072-16817
chr182179395721794052E072-12648
chr182179411921794416E072-12284
chr182179444221794521E072-12179
chr182179471121794876E072-11824
chr182179491321795868E072-10832
chr182179589121796212E072-10488
chr182179915821799208E072-7492
chr182179968121799854E072-6846
chr182180002721800202E072-6498
chr182180024621800344E072-6356
chr182180034821800554E072-6146
chr182180082421800874E072-5826
chr182180102221801062E072-5638
chr182180117621801267E072-5433
chr182180131821801368E072-5332
chr182180139621801446E072-5254
chr182180478821804838E072-1862
chr182180513621805278E072-1422
chr182180801121808232E0721311
chr182180825221808901E0721552
chr182181161321812650E0724913
chr182181276521813105E0726065
chr182181318021813249E0726480
chr182181478921815233E0728089
chr182182278121822848E07216081
chr182184041521840489E07233715
chr182184158621841781E07234886
chr182184185621841927E07235156
chr182184215121842351E07235451
chr182184247121842521E07235771
chr182184287721843337E07236177
chr182184421721844271E07237517
chr182184444721844497E07237747
chr182184627321846408E07239573
chr182185355621853656E07246856
chr182185537021855441E07248670
chr182175706321757159E073-49541
chr182175722821757497E073-49203
chr182175782921757879E073-48821
chr182175795121758018E073-48682
chr182175969821759988E073-46712
chr182176757321767625E073-39075
chr182176769521767739E073-38961
chr182176783921767889E073-38811
chr182176789321767970E073-38730
chr182176963721769681E073-37019
chr182176985821769916E073-36784
chr182177002521770248E073-36452
chr182177045521771340E073-35360
chr182177811721778180E073-28520
chr182177852321778633E073-28067
chr182177867721778840E073-27860
chr182177936821779593E073-27107
chr182177965821779863E073-26837
chr182178186221781984E073-24716
chr182178206221782148E073-24552
chr182178218421782283E073-24417
chr182178237621782491E073-24209
chr182178409721784168E073-22532
chr182178439321784518E073-22182
chr182178464421784698E073-22002
chr182178833221788994E073-17706
chr182178904921789146E073-17554
chr182178946321789563E073-17137
chr182179395721794052E073-12648
chr182179411921794416E073-12284
chr182179444221794521E073-12179
chr182179471121794876E073-11824
chr182179491321795868E073-10832
chr182179968121799854E073-6846
chr182179988721799940E073-6760
chr182180002721800202E073-6498
chr182180024621800344E073-6356
chr182180034821800554E073-6146
chr182180082421800874E073-5826
chr182181161321812650E0734913
chr182181276521813105E0736065
chr182181318021813249E0736480
chr182181850421818619E07311804
chr182181882621818895E07312126
chr182181915821819232E07312458
chr182181941721819581E07312717
chr182182360721823693E07316907
chr182182378821823880E07317088
chr182184041521840489E07333715
chr182184125321841488E07334553
chr182184149321841583E07334793
chr182184158621841781E07334886
chr182184185621841927E07335156
chr182184215121842351E07335451
chr182184247121842521E07335771
chr182184287721843337E07336177
chr182184444721844497E07337747
chr182184472821844794E07338028
chr182184553721845748E07338837
chr182184578621845873E07339086
chr182184594921846099E07339249
chr182184627321846408E07339573
chr182184871721849157E07342017
chr182185430621854366E07347606
chr182185442321854483E07347723
chr182185490021855313E07348200
chr182185537021855441E07348670
chr182175706321757159E074-49541
chr182175722821757497E074-49203
chr182175758821757703E074-48997
chr182175782921757879E074-48821
chr182175969821759988E074-46712
chr182176014021760333E074-46367
chr182176099921761128E074-45572
chr182176114421761194E074-45506
chr182176140321761460E074-45240
chr182176168621762064E074-44636
chr182176757321767625E074-39075
chr182176769521767739E074-38961
chr182176783921767889E074-38811
chr182176789321767970E074-38730
chr182176821321768263E074-38437
chr182176830521768371E074-38329
chr182176852921768579E074-38121
chr182176874421769475E074-37225
chr182176963721769681E074-37019
chr182176985821769916E074-36784
chr182177002521770248E074-36452
chr182177045521771340E074-35360
chr182177198921772054E074-34646
chr182177206221772201E074-34499
chr182177225821772419E074-34281
chr182177748421777726E074-28974
chr182177811721778180E074-28520
chr182177852321778633E074-28067
chr182177867721778840E074-27860
chr182177936821779593E074-27107
chr182177965821779863E074-26837
chr182178108521781283E074-25417
chr182178133421781405E074-25295
chr182178186221781984E074-24716
chr182178206221782148E074-24552
chr182178218421782283E074-24417
chr182178237621782491E074-24209
chr182178287521782939E074-23761
chr182178298321783097E074-23603
chr182178317021783234E074-23466
chr182178409721784168E074-22532
chr182178439321784518E074-22182
chr182178464421784698E074-22002
chr182178833221788994E074-17706
chr182178904921789146E074-17554
chr182178946321789563E074-17137
chr182178968221789883E074-16817
chr182179395721794052E074-12648
chr182179411921794416E074-12284
chr182179444221794521E074-12179
chr182179471121794876E074-11824
chr182179491321795868E074-10832
chr182179589121796212E074-10488
chr182179968121799854E074-6846
chr182179988721799940E074-6760
chr182180002721800202E074-6498
chr182180024621800344E074-6356
chr182180034821800554E074-6146
chr182180082421800874E074-5826
chr182180384921803929E074-2771
chr182180478821804838E074-1862
chr182180513621805278E074-1422
chr182180801121808232E0741311
chr182180825221808901E0741552
chr182181161321812650E0744913
chr182181276521813105E0746065
chr182181318021813249E0746480
chr182181850421818619E07411804
chr182181882621818895E07412126
chr182181915821819232E07412458
chr182181941721819581E07412717
chr182182451821824750E07417818
chr182182511921825159E07418419
chr182182543221825482E07418732
chr182182842221828590E07421722
chr182184041521840489E07433715
chr182184125321841488E07434553
chr182184215121842351E07435451
chr182184247121842521E07435771
chr182184287721843337E07436177
chr182184343721843487E07436737
chr182184378721843851E07437087
chr182184421721844271E07437517
chr182184444721844497E07437747
chr182184472821844794E07438028
chr182184536121845427E07438661
chr182184553721845748E07438837
chr182184578621845873E07439086
chr182184594921846099E07439249
chr182184627321846408E07439573
chr182184668921846739E07439989
chr182184871721849157E07442017
chr182184929421849724E07442594
chr182176874421769475E081-37225
chr182176963721769681E081-37019
chr182176985821769916E081-36784
chr182177002521770248E081-36452
chr182177678521776841E081-29859
chr182177688721776956E081-29744
chr182177748421777726E081-28974
chr182177811721778180E081-28520
chr182177852321778633E081-28067
chr182177867721778840E081-27860
chr182177936821779593E081-27107
chr182177965821779863E081-26837
chr182181161321812650E0814913
chr182181276521813105E0816065
chr182184215121842351E08135451
chr182184247121842521E08135771
chr182177002521770248E082-36452
chr182177045521771340E082-35360
chr182177811721778180E082-28520
chr182177852321778633E082-28067
chr182177867721778840E082-27860
chr182177936821779593E082-27107










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr182184974021849868E06743040
chr182185032321852679E06743623
chr182184974021849868E06843040
chr182185032321852679E06843623
chr182184974021849868E06943040
chr182185032321852679E06943623
chr182185032321852679E07043623
chr182184974021849868E07143040
chr182185032321852679E07143623
chr182184974021849868E07243040
chr182185032321852679E07243623
chr182184974021849868E07343040
chr182185032321852679E07343623
chr182184974021849868E07443040
chr182185032321852679E07443623
chr182185032321852679E08243623