SNP Detail Info-rs4307816

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0166 (4976/29938,GnomAD)
G=0213 (6223/29118,TOPMED)
G=0161 (807/5008,1000G)
G=0107 (411/3854,ALSPAC)
G=0104 (384/3708,TWINSUK)

Position: chr13:87077997 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87077997A>G
GRCh37.p13 chr 13	NC_000013.10:g.87730252A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.613	G=0.387
1000Genomes	American	Sub	694	A=0.890	G=0.110
1000Genomes	East Asian	Sub	1008	A=0.970	G=0.030
1000Genomes	Europe	Sub	1006	A=0.906	G=0.094
1000Genomes	Global	Study-wide	5008	A=0.839	G=0.161
1000Genomes	South Asian	Sub	978	A=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.893	G=0.107
The Genome Aggregation Database	African	Sub	8708	A=0.633	G=0.367
The Genome Aggregation Database	American	Sub	838	A=0.920	G=0.080
The Genome Aggregation Database	East Asian	Sub	1620	A=0.954	G=0.046
The Genome Aggregation Database	Europe	Sub	18470	A=0.913	G=0.086
The Genome Aggregation Database	Global	Study-wide	29938	A=0.833	G=0.166
The Genome Aggregation Database	Other	Sub	302	A=0.840	G=0.160
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.786	G=0.213
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.896	G=0.104

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs4307816	7.83E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87730252	SLITRK5	ENSG00000165300.6	A>G	7.2166e-3	-594618	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs4307816