rs4310165

Homo sapiens
C>A / C>T
FAM167A : Intron Variant
FAM167A-AS1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0016 (489/29982,GnomAD)
T=0021 (637/29118,TOPMED)
T=0017 (83/5008,1000G)
T=0000 (1/3854,ALSPAC)
T=0000 (0/3708,TWINSUK)
chr8:11437066 (GRCh38.p7) (8p23.1)
AD
GWASdb2
1   publication(s)
See rs on genome
11 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.11437066C>A
GRCh38.p7 chr 8NC_000008.11:g.11437066C>T
GRCh37.p13 chr 8NC_000008.10:g.11294575C>A
GRCh37.p13 chr 8NC_000008.10:g.11294575C>T

Gene: FAM167A, family with sequence similarity 167 member A(minus strand)

Molecule type Change Amino acid[Codon] SO Term
FAM167A transcriptNM_053279.2:c.N/AIntron Variant
FAM167A transcript variant X3XM_005272398.4:c.N/AIntron Variant
FAM167A transcript variant X1XM_011543837.1:c.N/AIntron Variant
FAM167A transcript variant X2XM_011543838.2:c.N/AIntron Variant
FAM167A transcript variant X4XM_011543840.2:c.N/AIntron Variant

Gene: FAM167A-AS1, FAM167A antisense RNA 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
FAM167A-AS1 transcriptNR_026814.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.939T=0.061
1000GenomesAmericanSub694C=1.000T=0.000
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=0.999T=0.001
1000GenomesGlobalStudy-wide5008C=0.983T=0.017
1000GenomesSouth AsianSub978C=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=1.000T=0.000
The Genome Aggregation DatabaseAfricanSub8724C=0.945T=0.055
The Genome Aggregation DatabaseAmericanSub838C=0.990T=0.01,
The Genome Aggregation DatabaseEast AsianSub1622C=0.999T=0.000
The Genome Aggregation DatabaseEuropeSub18496C=0.999T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29982C=0.983T=0.016
The Genome Aggregation DatabaseOtherSub302C=1.000T=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.978T=0.021
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=1.000T=0.000
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs43101650.000839alcohol dependence21314694

eQTL of rs4310165 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4310165 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr861194136119497E070-8394
chr861197046119754E070-8137
chr861210276121077E070-6814
chr861610306161161E07033139
chr861614076161461E07033516
chr861615256161576E07033634
chr860820726082190E081-45701
chr860822946082473E081-45418
chr860852376085300E081-42591
chr860853646085628E081-42263
chr860869736087090E081-40801