rs4322641

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0041 (1228/29982,GnomAD)
T=0068 (2002/29118,TOPMED)
T=0044 (218/5008,1000G)
chr15:91778892 (GRCh38.p7) (15q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
87 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.91778892C>T
GRCh37.p13 chr 15NC_000015.9:g.92322122C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.839T=0.161
1000GenomesAmericanSub694C=0.990T=0.010
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=1.000T=0.000
1000GenomesGlobalStudy-wide5008C=0.956T=0.044
1000GenomesSouth AsianSub978C=1.000T=0.000
The Genome Aggregation DatabaseAfricanSub8726C=0.861T=0.139
The Genome Aggregation DatabaseAmericanSub838C=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1622C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18494C=0.999T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29982C=0.959T=0.041
The Genome Aggregation DatabaseOtherSub302C=1.000T=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.931T=0.068
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs43226410.000166alcohol dependence21314694

eQTL of rs4322641 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4322641 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr159227586092276583E067-45539
chr159229500392295047E067-27075
chr159229507492295199E067-26923
chr159229542392295520E067-26602
chr159229553792295630E067-26492
chr159229573692295860E067-26262
chr159229500392295047E068-27075
chr159229507492295199E068-26923
chr159229542392295520E068-26602
chr159229601792296071E068-26051
chr159229617492296243E068-25879
chr159229698992297068E068-25054
chr159229710492297259E068-24863
chr159227586092276583E069-45539
chr159228187692281927E069-40195
chr159229500392295047E069-27075
chr159229507492295199E069-26923
chr159229542392295520E069-26602
chr159229553792295630E069-26492
chr159229573692295860E069-26262
chr159229601792296071E069-26051
chr159229617492296243E069-25879
chr159229710492297259E069-24863
chr159229734492297388E069-24734
chr159229751992297569E069-24553
chr159229768692297809E069-24313
chr159236756892367924E06945446
chr159236756892367924E07045446
chr159236795292368091E07045830
chr159236827492368610E07046152
chr159236881292368862E07046690
chr159236900192369051E07046879
chr159227578692275839E071-46283
chr159227586092276583E071-45539
chr159228187692281927E071-40195
chr159228334392283413E071-38709
chr159228350292283559E071-38563
chr159229500392295047E071-27075
chr159229507492295199E071-26923
chr159229542392295520E071-26602
chr159229553792295630E071-26492
chr159229573692295860E071-26262
chr159229601792296071E071-26051
chr159229617492296243E071-25879
chr159229698992297068E071-25054
chr159229710492297259E071-24863
chr159229734492297388E071-24734
chr159227586092276583E072-45539
chr159229376692293816E072-28306
chr159229409092294147E072-27975
chr159229500392295047E072-27075
chr159229507492295199E072-26923
chr159229542392295520E072-26602
chr159229573692295860E072-26262
chr159229601792296071E072-26051
chr159229617492296243E072-25879
chr159229710492297259E072-24863
chr159229734492297388E072-24734
chr159229500392295047E073-27075
chr159229507492295199E073-26923
chr159229542392295520E073-26602
chr159229553792295630E073-26492
chr159229573692295860E073-26262
chr159227586092276583E074-45539
chr159228334392283413E074-38709
chr159228350292283559E074-38563
chr159228539392285457E074-36665
chr159229500392295047E074-27075
chr159229507492295199E074-26923
chr159229542392295520E074-26602
chr159229553792295630E074-26492
chr159229573692295860E074-26262
chr159229601792296071E074-26051
chr159229617492296243E074-25879
chr159229500392295047E081-27075
chr159229507492295199E081-26923
chr159231133692311456E081-10666
chr159231228092312320E081-9802
chr159231233892312388E081-9734
chr159231247592312867E081-9255
chr159231320792313554E081-8568
chr159236922392369318E08147101
chr159236938892369678E08147266
chr159236692292367147E08244800
chr159236756892367924E08245446
chr159236795292368091E08245830
chr159236827492368610E08246152