SNP Detail Info-rs4328383

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.94320608T>G
GRCh37.p13 chr 15	NC_000015.9:g.94863837T>G

Molecule type	Change	Amino acid[Codon]	SO Term
MCTP2 transcript variant 2	NM_001159643.1:c.	N/A	Intron Variant
MCTP2 transcript variant 1	NM_018349.3:c.	N/A	Intron Variant
MCTP2 transcript variant 3	NM_001159644.1:c.	N/A	Genic Upstream Transcript Variant
MCTP2 transcript variant X4	XM_005254955.3:c.	N/A	Intron Variant
MCTP2 transcript variant X5	XM_006720603.2:c.	N/A	Intron Variant
MCTP2 transcript variant X3	XM_011521770.1:c.	N/A	Intron Variant
MCTP2 transcript variant X6	XM_011521771.2:c.	N/A	Intron Variant
MCTP2 transcript variant X7	XM_011521772.2:c.	N/A	Intron Variant
MCTP2 transcript variant X8	XM_011521773.2:c.	N/A	Intron Variant
MCTP2 transcript variant X11	XM_011521774.2:c.	N/A	Intron Variant
MCTP2 transcript variant X1	XM_017022403.1:c.	N/A	Intron Variant
MCTP2 transcript variant X9	XM_017022404.1:c.	N/A	Intron Variant
MCTP2 transcript variant X10	XM_017022405.1:c.	N/A	Intron Variant
MCTP2 transcript variant X15	XM_005254960.2:c.	N/A	Genic Upstream Transcript Variant
MCTP2 transcript variant X14	XM_011521775.2:c.	N/A	Genic Upstream Transcript Variant
MCTP2 transcript variant X12	XR_001751349.1:n.	N/A	Intron Variant
MCTP2 transcript variant X2	XR_931865.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.110	G=0.890
1000Genomes	American	Sub	694	T=0.130	G=0.870
1000Genomes	East Asian	Sub	1008	T=0.057	G=0.943
1000Genomes	Europe	Sub	1006	T=0.185	G=0.815
1000Genomes	Global	Study-wide	5008	T=0.125	G=0.875
1000Genomes	South Asian	Sub	978	T=0.150	G=0.850
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.178	G=0.822
The Genome Aggregation Database	African	Sub	8726	T=0.111	G=0.889
The Genome Aggregation Database	American	Sub	834	T=0.110	G=0.890
The Genome Aggregation Database	East Asian	Sub	1618	T=0.067	G=0.933
The Genome Aggregation Database	Europe	Sub	18478	T=0.185	G=0.814
The Genome Aggregation Database	Global	Study-wide	29958	T=0.154	G=0.845
The Genome Aggregation Database	Other	Sub	302	T=0.100	G=0.900
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.142	G=0.857
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.186	G=0.814

PMID	Title	Author	Journal
24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Quillen EE	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs4328383	0.000729	alcohol dependence	24277619

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	94909453	94909569	E070	45616
chr15	94910092	94910315	E070	46255
chr15	94910543	94910603	E070	46706
chr15	94910737	94910827	E070	46900
chr15	94910849	94911548	E070	47012
chr15	94911954	94912004	E070	48117
chr15	94912086	94912255	E070	48249
chr15	94912621	94912676	E070	48784
chr15	94912691	94912751	E070	48854
chr15	94912854	94912935	E070	49017
chr15	94913241	94913384	E070	49404
chr15	94867183	94867882	E072	3346
chr15	94910092	94910315	E081	46255
chr15	94910543	94910603	E081	46706
chr15	94910737	94910827	E081	46900
chr15	94857165	94857385	E082	-6452
chr15	94910092	94910315	E082	46255
chr15	94910543	94910603	E082	46706
chr15	94910737	94910827	E082	46900
chr15	94910849	94911548	E082	47012

rs4328383