| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 4 | NC_000004.12:g.22831059A>G |
| GRCh37.p13 chr 4 | NC_000004.11:g.22832682A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.692 | G=0.308 |
| 1000Genomes | American | Sub | 694 | A=0.640 | G=0.360 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.334 | G=0.666 |
| 1000Genomes | Europe | Sub | 1006 | A=0.636 | G=0.364 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.584 | G=0.416 |
| 1000Genomes | South Asian | Sub | 978 | A=0.600 | G=0.400 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.624 | G=0.376 |
| The Genome Aggregation Database | African | Sub | 8694 | A=0.680 | G=0.320 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.570 | G=0.430 |
| The Genome Aggregation Database | East Asian | Sub | 1596 | A=0.279 | G=0.721 |
| The Genome Aggregation Database | Europe | Sub | 18448 | A=0.620 | G=0.379 |
| The Genome Aggregation Database | Global | Study-wide | 29878 | A=0.618 | G=0.381 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.650 | G=0.350 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.643 | G=0.356 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.636 | G=0.364 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs439863 | 0.000591 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr4 | 22844606 | 22844660 | E070 | 11924 |
| chr4 | 22879169 | 22879465 | E070 | 46487 |
| chr4 | 22880656 | 22880799 | E070 | 47974 |
| chr4 | 22821873 | 22822016 | E082 | -10666 |
| chr4 | 22822468 | 22822648 | E082 | -10034 |
| chr4 | 22823268 | 22823346 | E082 | -9336 |
| chr4 | 22879169 | 22879465 | E082 | 46487 |