Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.155650004T>C |
GRCh37.p13 chr 2 | NC_000002.11:g.156506516T>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC107985953 transcript variant X1 | XR_001739746.1:n. | N/A | Intron Variant |
LOC107985953 transcript variant X2 | XR_001739747.1:n. | N/A | Intron Variant |
LOC107985953 transcript variant X3 | XR_001739748.1:n. | N/A | Genic Downstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.261 | C=0.739 |
1000Genomes | American | Sub | 694 | T=0.040 | C=0.960 |
1000Genomes | East Asian | Sub | 1008 | T=0.020 | C=0.980 |
1000Genomes | Europe | Sub | 1006 | T=0.017 | C=0.983 |
1000Genomes | Global | Study-wide | 5008 | T=0.089 | C=0.911 |
1000Genomes | South Asian | Sub | 978 | T=0.030 | C=0.970 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.030 | C=0.970 |
The Genome Aggregation Database | African | Sub | 8706 | T=0.232 | C=0.768 |
The Genome Aggregation Database | American | Sub | 836 | T=0.030 | C=0.970 |
The Genome Aggregation Database | East Asian | Sub | 1618 | T=0.018 | C=0.982 |
The Genome Aggregation Database | Europe | Sub | 18480 | T=0.028 | C=0.971 |
The Genome Aggregation Database | Global | Study-wide | 29942 | T=0.087 | C=0.913 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.010 | C=0.990 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.116 | C=0.883 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.035 | C=0.965 |
PMID | Title | Author | Journal |
---|---|---|---|
23953852 | Genome-wide association studies of maximum number of drinks. | Pan Y | J Psychiatr Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs4407211 | 3.24E-06 | alcohol consumption | 23953852 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 156547477 | 156547564 | E068 | 40961 |
chr2 | 156547580 | 156547696 | E068 | 41064 |
chr2 | 156545853 | 156546995 | E069 | 39337 |
chr2 | 156547091 | 156547260 | E069 | 40575 |
chr2 | 156547477 | 156547564 | E069 | 40961 |
chr2 | 156547580 | 156547696 | E069 | 41064 |
chr2 | 156545853 | 156546995 | E071 | 39337 |
chr2 | 156547091 | 156547260 | E071 | 40575 |
chr2 | 156547477 | 156547564 | E071 | 40961 |
chr2 | 156547580 | 156547696 | E071 | 41064 |
chr2 | 156548664 | 156548911 | E074 | 42148 |