Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.136251436A>G |
GRCh37.p13 chr 2 | NC_000002.11:g.137009006A>G |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.759 | G=0.241 |
1000Genomes | American | Sub | 694 | A=0.760 | G=0.240 |
1000Genomes | East Asian | Sub | 1008 | A=0.603 | G=0.397 |
1000Genomes | Europe | Sub | 1006 | A=0.744 | G=0.256 |
1000Genomes | Global | Study-wide | 5008 | A=0.710 | G=0.290 |
1000Genomes | South Asian | Sub | 978 | A=0.680 | G=0.320 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.838 | G=0.162 |
The Genome Aggregation Database | African | Sub | 8706 | A=0.755 | G=0.245 |
The Genome Aggregation Database | American | Sub | 838 | A=0.680 | G=0.320 |
The Genome Aggregation Database | East Asian | Sub | 1614 | A=0.567 | G=0.433 |
The Genome Aggregation Database | Europe | Sub | 18486 | A=0.798 | G=0.201 |
The Genome Aggregation Database | Global | Study-wide | 29946 | A=0.768 | G=0.232 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.610 | G=0.390 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.760 | G=0.239 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.811 | G=0.189 |
PMID | Title | Author | Journal |
---|---|---|---|
21703634 | A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence. | Wang KS | J Psychiatr Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs4477975 | 9.68E-05 | alcohol dependence | 21703634 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 136977310 | 136977791 | E067 | -31215 |
chr2 | 136977924 | 136978007 | E067 | -30999 |
chr2 | 136978141 | 136978241 | E067 | -30765 |
chr2 | 136977924 | 136978007 | E068 | -30999 |
chr2 | 136978141 | 136978241 | E068 | -30765 |
chr2 | 136978416 | 136978518 | E068 | -30488 |
chr2 | 136977924 | 136978007 | E069 | -30999 |
chr2 | 136978141 | 136978241 | E069 | -30765 |
chr2 | 136995499 | 136997317 | E069 | -11689 |
chr2 | 137001646 | 137002009 | E069 | -6997 |
chr2 | 137009363 | 137009427 | E069 | 357 |
chr2 | 137009448 | 137009938 | E069 | 442 |
chr2 | 136964127 | 136964692 | E070 | -44314 |
chr2 | 136964741 | 136965226 | E070 | -43780 |
chr2 | 136965228 | 136965682 | E070 | -43324 |
chr2 | 136983372 | 136984335 | E070 | -24671 |
chr2 | 136984351 | 136984606 | E070 | -24400 |
chr2 | 137001646 | 137002009 | E070 | -6997 |
chr2 | 137005109 | 137005491 | E070 | -3515 |
chr2 | 137005862 | 137006220 | E070 | -2786 |
chr2 | 137035376 | 137035455 | E070 | 26370 |
chr2 | 137036721 | 137036862 | E070 | 27715 |
chr2 | 137038596 | 137039731 | E070 | 29590 |
chr2 | 137055660 | 137055740 | E070 | 46654 |
chr2 | 137057144 | 137057418 | E070 | 48138 |
chr2 | 137057817 | 137057965 | E070 | 48811 |
chr2 | 137058409 | 137058528 | E070 | 49403 |
chr2 | 136977310 | 136977791 | E071 | -31215 |
chr2 | 136977924 | 136978007 | E071 | -30999 |
chr2 | 137009233 | 137009311 | E072 | 227 |
chr2 | 137009363 | 137009427 | E072 | 357 |
chr2 | 137009448 | 137009938 | E072 | 442 |
chr2 | 137009448 | 137009938 | E073 | 442 |
chr2 | 136977924 | 136978007 | E074 | -30999 |
chr2 | 136978141 | 136978241 | E074 | -30765 |
chr2 | 137003523 | 137004240 | E074 | -4766 |
chr2 | 137008328 | 137008511 | E074 | -495 |
chr2 | 137008559 | 137008715 | E074 | -291 |
chr2 | 137008757 | 137008891 | E074 | -115 |
chr2 | 137008906 | 137008996 | E074 | -10 |
chr2 | 137009078 | 137009141 | E074 | 72 |
chr2 | 137009233 | 137009311 | E074 | 227 |
chr2 | 137009363 | 137009427 | E074 | 357 |
chr2 | 137009448 | 137009938 | E074 | 442 |
chr2 | 137010047 | 137010134 | E074 | 1041 |
chr2 | 137058409 | 137058528 | E081 | 49403 |
chr2 | 137003523 | 137004240 | E082 | -4766 |