rs4479194

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0260 (7809/29934,GnomAD)
G==0211 (6167/29118,TOPMED)
G==0217 (1085/5008,1000G)
G==0272 (1049/3854,ALSPAC)
G==0278 (1032/3708,TWINSUK)
chr15:75129790 (GRCh38.p7) (15q24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.75129790G>A
GRCh37.p13 chr 15NC_000015.9:g.75422131G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.101A=0.899
1000GenomesAmericanSub694G=0.250A=0.750
1000GenomesEast AsianSub1008G=0.201A=0.799
1000GenomesEuropeSub1006G=0.313A=0.687
1000GenomesGlobalStudy-wide5008G=0.217A=0.783
1000GenomesSouth AsianSub978G=0.270A=0.730
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.272A=0.728
The Genome Aggregation DatabaseAfricanSub8716G=0.130A=0.870
The Genome Aggregation DatabaseAmericanSub838G=0.310A=0.690
The Genome Aggregation DatabaseEast AsianSub1610G=0.240A=0.760
The Genome Aggregation DatabaseEuropeSub18470G=0.323A=0.676
The Genome Aggregation DatabaseGlobalStudy-wide29934G=0.260A=0.739
The Genome Aggregation DatabaseOtherSub300G=0.230A=0.770
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.211A=0.788
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.278A=0.722
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs44791945.27E-06alcohol dependence23089632

eQTL of rs4479194 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4479194 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr157538201175382398E068-39733
chr157540728775407428E068-14703
chr157540728775407428E069-14703
chr157539698875397911E071-24220
chr157540253175402680E071-19451
chr157541656375416758E071-5373
chr157540728775407428E073-14703
chr157546977075469901E07347639
chr157540728775407428E074-14703