| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 15 | NC_000015.10:g.75129790G>A |
| GRCh37.p13 chr 15 | NC_000015.9:g.75422131G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.101 | A=0.899 |
| 1000Genomes | American | Sub | 694 | G=0.250 | A=0.750 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.201 | A=0.799 |
| 1000Genomes | Europe | Sub | 1006 | G=0.313 | A=0.687 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.217 | A=0.783 |
| 1000Genomes | South Asian | Sub | 978 | G=0.270 | A=0.730 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.272 | A=0.728 |
| The Genome Aggregation Database | African | Sub | 8716 | G=0.130 | A=0.870 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.310 | A=0.690 |
| The Genome Aggregation Database | East Asian | Sub | 1610 | G=0.240 | A=0.760 |
| The Genome Aggregation Database | Europe | Sub | 18470 | G=0.323 | A=0.676 |
| The Genome Aggregation Database | Global | Study-wide | 29934 | G=0.260 | A=0.739 |
| The Genome Aggregation Database | Other | Sub | 300 | G=0.230 | A=0.770 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.211 | A=0.788 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.278 | A=0.722 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23089632 | A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53. | Wang JC | Mol Psychiatry |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs4479194 | 5.27E-06 | alcohol dependence | 23089632 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr15 | 75382011 | 75382398 | E068 | -39733 |
| chr15 | 75407287 | 75407428 | E068 | -14703 |
| chr15 | 75407287 | 75407428 | E069 | -14703 |
| chr15 | 75396988 | 75397911 | E071 | -24220 |
| chr15 | 75402531 | 75402680 | E071 | -19451 |
| chr15 | 75416563 | 75416758 | E071 | -5373 |
| chr15 | 75407287 | 75407428 | E073 | -14703 |
| chr15 | 75469770 | 75469901 | E073 | 47639 |
| chr15 | 75407287 | 75407428 | E074 | -14703 |