| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 18 | NC_000018.10:g.27836281A>G |
| GRCh37.p13 chr 18 | NC_000018.9:g.25416245A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.877 | G=0.123 |
| 1000Genomes | American | Sub | 694 | A=0.450 | G=0.550 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.755 | G=0.245 |
| 1000Genomes | Europe | Sub | 1006 | A=0.411 | G=0.589 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.656 | G=0.344 |
| 1000Genomes | South Asian | Sub | 978 | A=0.660 | G=0.340 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.409 | G=0.591 |
| The Genome Aggregation Database | African | Sub | 8714 | A=0.788 | G=0.212 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.500 | G=0.500 |
| The Genome Aggregation Database | East Asian | Sub | 1596 | A=0.764 | G=0.236 |
| The Genome Aggregation Database | Europe | Sub | 18440 | A=0.380 | G=0.619 |
| The Genome Aggregation Database | Global | Study-wide | 29888 | A=0.522 | G=0.477 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.390 | G=0.610 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.591 | G=0.408 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.399 | G=0.601 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23958962 | Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene. | Gelernter J | Mol Psychiatry |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs4525572 | 0.0000642 | cocaine dependence | 23958962 |
| rs4525572 | 0.000163 | cocaine dependence | 23958962 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr18 | 25404956 | 25405047 | E070 | -11198 |
| chr18 | 25405130 | 25405488 | E070 | -10757 |
| chr18 | 25405495 | 25405622 | E070 | -10623 |
| chr18 | 25405692 | 25405766 | E070 | -10479 |
| chr18 | 25405836 | 25406010 | E070 | -10235 |
| chr18 | 25412039 | 25412300 | E070 | -3945 |