rs4580155

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0349 (10446/29886,GnomAD)
T==0416 (12125/29118,TOPMED)
T==0347 (1736/5008,1000G)
T==0298 (1149/3854,ALSPAC)
T==0296 (1096/3708,TWINSUK)
chr16:81968499 (GRCh38.p7) (16q23.3)
AD
GWASdb2
1   publication(s)
See rs on genome
7 Enhancers around
1 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.81968499T>C
GRCh37.p13 chr 16NC_000016.9:g.82002104T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.595C=0.405
1000GenomesAmericanSub694T=0.290C=0.710
1000GenomesEast AsianSub1008T=0.209C=0.791
1000GenomesEuropeSub1006T=0.304C=0.696
1000GenomesGlobalStudy-wide5008T=0.347C=0.653
1000GenomesSouth AsianSub978T=0.240C=0.760
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.298C=0.702
The Genome Aggregation DatabaseAfricanSub8692T=0.555C=0.445
The Genome Aggregation DatabaseAmericanSub836T=0.290C=0.710
The Genome Aggregation DatabaseEast AsianSub1618T=0.158C=0.842
The Genome Aggregation DatabaseEuropeSub18438T=0.274C=0.725
The Genome Aggregation DatabaseGlobalStudy-wide29886T=0.349C=0.650
The Genome Aggregation DatabaseOtherSub302T=0.200C=0.800
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.416C=0.583
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.296C=0.704
PMID Title Author Journal
21956439Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.Zuo LNeuropsychopharmacology

P-Value

SNP ID p-value Traits Study
rs45801558E-06alcohol dependence21956439

eQTL of rs4580155 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4580155 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr168197133381971622E068-30482
chr168197172481971845E068-30259
chr168202625182026506E06824147
chr168202656782026784E06824463
chr168202682182026923E06824717
chr168202692882026998E06824824
chr168197272081973574E070-28530


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr168204424882045468E06842144