SNP Detail Info-rs4596772

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0483 (9936/20547,GnomAD)
G=0339 (1280/3775,1000G)
A==0310 (1149/3708,TWINSUK)
A==0315 (910/2889,ALSPAC)

Position: chrX:79847546 (GRCh38.p7) (Xq21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.79847546A>G
GRCh37.p13 chr X	NC_000023.10:g.79103046A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	A=0.929	G=0.071
1000Genomes	American	Sub	524	A=0.640	G=0.360
1000Genomes	East Asian	Sub	764	A=0.880	G=0.120
1000Genomes	Europe	Sub	766	A=0.340	G=0.660
1000Genomes	Global	Study-wide	3775	A=0.661	G=0.339
1000Genomes	South Asian	Sub	718	A=0.420	G=0.580
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	A=0.315	G=0.685
The Genome Aggregation Database	African	Sub	5865	A=0.872	G=0.128
The Genome Aggregation Database	American	Sub	606	A=0.650	G=0.350
The Genome Aggregation Database	East Asian	Sub	1022	A=0.872	G=0.128
The Genome Aggregation Database	Europe	Sub	12868	A=0.320	G=0.679
The Genome Aggregation Database	Global	Study-wide	20547	A=0.516	G=0.483
The Genome Aggregation Database	Other	Sub	186	A=0.470	G=0.530
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.310	G=0.690

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs4596772	0.000979	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs4596772