| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.55271856A>G |
| GRCh37.p13 chr 3 | NC_000003.11:g.55305884A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.579 | G=0.421 |
| 1000Genomes | American | Sub | 694 | A=0.210 | G=0.790 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.297 | G=0.703 |
| 1000Genomes | Europe | Sub | 1006 | A=0.286 | G=0.714 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.349 | G=0.651 |
| 1000Genomes | South Asian | Sub | 978 | A=0.250 | G=0.750 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.258 | G=0.742 |
| The Genome Aggregation Database | African | Sub | 8702 | A=0.546 | G=0.454 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.170 | G=0.830 |
| The Genome Aggregation Database | East Asian | Sub | 1582 | A=0.264 | G=0.736 |
| The Genome Aggregation Database | Europe | Sub | 18470 | A=0.285 | G=0.714 |
| The Genome Aggregation Database | Global | Study-wide | 29894 | A=0.357 | G=0.642 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.280 | G=0.720 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.394 | G=0.605 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.267 | G=0.733 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs459737 | 0.000399 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 55338459 | 55338522 | E070 | 32575 |
| chr3 | 55339706 | 55339801 | E070 | 33822 |
| chr3 | 55339937 | 55340043 | E070 | 34053 |
| chr3 | 55340138 | 55340506 | E070 | 34254 |
| chr3 | 55339706 | 55339801 | E082 | 33822 |
| chr3 | 55339937 | 55340043 | E082 | 34053 |
| chr3 | 55340138 | 55340506 | E082 | 34254 |