rs462437

Homo sapiens
A>C / A>G / A>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0109 (548/5008,1000G)
chr5:2491471 (GRCh38.p7) (5p15.33)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.2491471A>C
GRCh38.p7 chr 5NC_000005.10:g.2491471A>G
GRCh38.p7 chr 5NC_000005.10:g.2491471A>T
GRCh37.p13 chr 5NC_000005.9:g.2491585A>C
GRCh37.p13 chr 5NC_000005.9:g.2491585A>G
GRCh37.p13 chr 5NC_000005.9:g.2491585A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.107C=0.834
1000GenomesAmericanSub694A=0.040C=0.93,
1000GenomesEast AsianSub1008A=0.104C=0.574
1000GenomesEuropeSub1006A=0.026C=0.909
1000GenomesGlobalStudy-wide5008A=0.071C=0.820
1000GenomesSouth AsianSub978A=0.060C=0.89,
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs4624373.43E-06alcohol and nictotine co-dependence20158304

eQTL of rs462437 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs462437 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.