| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 1 | NC_000001.11:g.169718994A>C |
| GRCh37.p13 chr 1 | NC_000001.10:g.169688135A>C |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.571 | C=0.429 |
| 1000Genomes | American | Sub | 694 | A=0.640 | C=0.360 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.671 | C=0.329 |
| 1000Genomes | Europe | Sub | 1006 | A=0.713 | C=0.287 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.625 | C=0.375 |
| 1000Genomes | South Asian | Sub | 978 | A=0.550 | C=0.450 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.747 | C=0.253 |
| The Genome Aggregation Database | African | Sub | 8688 | A=0.615 | C=0.385 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.600 | C=0.400 |
| The Genome Aggregation Database | East Asian | Sub | 1602 | A=0.656 | C=0.344 |
| The Genome Aggregation Database | Europe | Sub | 18426 | A=0.746 | C=0.253 |
| The Genome Aggregation Database | Global | Study-wide | 29856 | A=0.698 | C=0.301 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.670 | C=0.330 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.672 | C=0.327 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.759 | C=0.241 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs4656703 | 0.0000448 | alcoholism | pha002891 |
| rs4656703 | 0.0000448 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
|---|---|---|---|---|---|---|
| Chr1:169688135 | RN7SL333P | ENSG00000239494.2 | A>C | 3.6310e-3 | -140762 | Cerebellar_Hemisphere |
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr1 | 169663053 | 169664067 | E071 | -24068 |
| chr1 | 169664116 | 169664389 | E071 | -23746 |
| chr1 | 169661474 | 169662757 | E074 | -25378 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr1 | 169680599 | 169681493 | E067 | -6642 |
| chr1 | 169680599 | 169681493 | E068 | -6642 |
| chr1 | 169680599 | 169681493 | E069 | -6642 |
| chr1 | 169680599 | 169681493 | E071 | -6642 |
| chr1 | 169680599 | 169681493 | E072 | -6642 |
| chr1 | 169680599 | 169681493 | E073 | -6642 |
| chr1 | 169680599 | 169681493 | E074 | -6642 |