Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.123948677A>C |
GRCh38.p7 chr 3 | NC_000003.12:g.123948677A>T |
GRCh37.p13 chr 3 | NC_000003.11:g.123667524A>C |
GRCh37.p13 chr 3 | NC_000003.11:g.123667524A>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
CCDC14 transcript variant 2 | NM_001308317.1:c. | N/A | Intron Variant |
CCDC14 transcript variant 1 | NM_022757.4:c. | N/A | Intron Variant |
CCDC14 transcript variant X1 | XM_005247710.4:c. | N/A | Intron Variant |
CCDC14 transcript variant X3 | XM_005247711.4:c. | N/A | Intron Variant |
CCDC14 transcript variant X6 | XM_005247713.2:c. | N/A | Intron Variant |
CCDC14 transcript variant X7 | XM_005247714.2:c. | N/A | Intron Variant |
CCDC14 transcript variant X9 | XM_005247715.4:c. | N/A | Intron Variant |
CCDC14 transcript variant X15 | XM_005247716.4:c. | N/A | Intron Variant |
CCDC14 transcript variant X2 | XM_006713731.3:c. | N/A | Intron Variant |
CCDC14 transcript variant X11 | XM_006713733.3:c. | N/A | Intron Variant |
CCDC14 transcript variant X10 | XM_011513081.2:c. | N/A | Intron Variant |
CCDC14 transcript variant X4 | XM_017007056.1:c. | N/A | Intron Variant |
CCDC14 transcript variant X5 | XM_017007057.1:c. | N/A | Intron Variant |
CCDC14 transcript variant X8 | XM_017007058.1:c. | N/A | Intron Variant |
CCDC14 transcript variant X12 | XM_017007059.1:c. | N/A | Intron Variant |
CCDC14 transcript variant X13 | XM_017007060.1:c. | N/A | Intron Variant |
CCDC14 transcript variant X16 | XM_017007061.1:c. | N/A | Intron Variant |
CCDC14 transcript variant X14 | XR_001740237.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.721 | C=0.279 |
1000Genomes | American | Sub | 694 | A=0.690 | C=0.310 |
1000Genomes | East Asian | Sub | 1008 | A=0.588 | C=0.412 |
1000Genomes | Europe | Sub | 1006 | A=0.985 | C=0.015 |
1000Genomes | Global | Study-wide | 5008 | A=0.777 | C=0.223 |
1000Genomes | South Asian | Sub | 978 | A=0.900 | C=0.100 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.995 | C=0.005 |
The Genome Aggregation Database | African | Sub | 8710 | A=0.774 | C=0.226 |
The Genome Aggregation Database | American | Sub | 838 | A=0.700 | C=0.300 |
The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.583 | C=0.417 |
The Genome Aggregation Database | Europe | Sub | 18496 | A=0.982 | C=0.017 |
The Genome Aggregation Database | Global | Study-wide | 29966 | A=0.892 | C=0.107 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.980 | C=0.020 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.872 | C=0.128 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.996 | C=0.004 |
PMID | Title | Author | Journal |
---|
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs4678073 | 3.18E-12 | alcohol consumption | pha001400 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value |
---|---|---|---|---|
cg01448562 | chr3:133502909 | -0.0511115974924645 | 3.6190e-17 | |
cg08048268 | chr3:133502702 | -0.115091009612969 | 6.8731e-17 | |
cg16275903 | chr3:133524006 | SRPRB | 0.0513668901387308 | 1.8504e-16 |
cg16414030 | chr3:133502952 | -0.0759626868168918 | 1.0901e-15 | |
cg20276088 | chr3:133502917 | -0.0299947562732181 | 1.1981e-12 | |
cg11941060 | chr3:133502564 | -0.0526357612329571 | 1.8759e-11 | |
cg08439880 | chr3:133502540 | -0.0562531495861009 | 4.2001e-11 |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 133431016 | 133431089 | E067 | -34610 |
chr3 | 133436424 | 133436504 | E067 | -29195 |
chr3 | 133461397 | 133461916 | E067 | -3783 |
chr3 | 133461945 | 133462055 | E067 | -3644 |
chr3 | 133464069 | 133464119 | E067 | -1580 |
chr3 | 133464448 | 133464526 | E067 | -1173 |
chr3 | 133482923 | 133483028 | E067 | 17224 |
chr3 | 133483054 | 133483594 | E067 | 17355 |
chr3 | 133483998 | 133484070 | E067 | 18299 |
chr3 | 133436424 | 133436504 | E068 | -29195 |
chr3 | 133464069 | 133464119 | E068 | -1580 |
chr3 | 133482562 | 133482616 | E068 | 16863 |
chr3 | 133482923 | 133483028 | E068 | 17224 |
chr3 | 133483054 | 133483594 | E068 | 17355 |
chr3 | 133431016 | 133431089 | E069 | -34610 |
chr3 | 133436424 | 133436504 | E069 | -29195 |
chr3 | 133461397 | 133461916 | E069 | -3783 |
chr3 | 133461945 | 133462055 | E069 | -3644 |
chr3 | 133464069 | 133464119 | E069 | -1580 |
chr3 | 133473014 | 133473073 | E069 | 7315 |
chr3 | 133473315 | 133473659 | E069 | 7616 |
chr3 | 133476260 | 133476458 | E069 | 10561 |
chr3 | 133482562 | 133482616 | E069 | 16863 |
chr3 | 133482923 | 133483028 | E069 | 17224 |
chr3 | 133483054 | 133483594 | E069 | 17355 |
chr3 | 133483998 | 133484070 | E069 | 18299 |
chr3 | 133484337 | 133484387 | E069 | 18638 |
chr3 | 133482923 | 133483028 | E070 | 17224 |
chr3 | 133483054 | 133483594 | E070 | 17355 |
chr3 | 133431016 | 133431089 | E071 | -34610 |
chr3 | 133436424 | 133436504 | E071 | -29195 |
chr3 | 133461397 | 133461916 | E071 | -3783 |
chr3 | 133461945 | 133462055 | E071 | -3644 |
chr3 | 133464069 | 133464119 | E071 | -1580 |
chr3 | 133473014 | 133473073 | E071 | 7315 |
chr3 | 133473315 | 133473659 | E071 | 7616 |
chr3 | 133482562 | 133482616 | E071 | 16863 |
chr3 | 133482923 | 133483028 | E071 | 17224 |
chr3 | 133483054 | 133483594 | E071 | 17355 |
chr3 | 133483998 | 133484070 | E071 | 18299 |
chr3 | 133484337 | 133484387 | E071 | 18638 |
chr3 | 133431016 | 133431089 | E072 | -34610 |
chr3 | 133461397 | 133461916 | E072 | -3783 |
chr3 | 133461945 | 133462055 | E072 | -3644 |
chr3 | 133464069 | 133464119 | E072 | -1580 |
chr3 | 133464448 | 133464526 | E072 | -1173 |
chr3 | 133473014 | 133473073 | E072 | 7315 |
chr3 | 133482923 | 133483028 | E072 | 17224 |
chr3 | 133483054 | 133483594 | E072 | 17355 |
chr3 | 133483998 | 133484070 | E072 | 18299 |
chr3 | 133484337 | 133484387 | E072 | 18638 |
chr3 | 133436424 | 133436504 | E073 | -29195 |
chr3 | 133461397 | 133461916 | E073 | -3783 |
chr3 | 133461945 | 133462055 | E073 | -3644 |
chr3 | 133464448 | 133464526 | E073 | -1173 |
chr3 | 133482923 | 133483028 | E073 | 17224 |
chr3 | 133483054 | 133483594 | E073 | 17355 |
chr3 | 133431016 | 133431089 | E074 | -34610 |
chr3 | 133436424 | 133436504 | E074 | -29195 |
chr3 | 133461397 | 133461916 | E074 | -3783 |
chr3 | 133461945 | 133462055 | E074 | -3644 |
chr3 | 133464069 | 133464119 | E074 | -1580 |
chr3 | 133473014 | 133473073 | E074 | 7315 |
chr3 | 133473315 | 133473659 | E074 | 7616 |
chr3 | 133476260 | 133476458 | E074 | 10561 |
chr3 | 133482562 | 133482616 | E074 | 16863 |
chr3 | 133482923 | 133483028 | E074 | 17224 |
chr3 | 133483054 | 133483594 | E074 | 17355 |
chr3 | 133483998 | 133484070 | E074 | 18299 |
chr3 | 133484337 | 133484387 | E074 | 18638 |
chr3 | 133464448 | 133464526 | E082 | -1173 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 133464975 | 133465152 | E067 | -547 |
chr3 | 133465195 | 133465439 | E067 | -260 |
chr3 | 133465691 | 133465761 | E067 | 0 |
chr3 | 133468272 | 133468322 | E067 | 2573 |
chr3 | 133464975 | 133465152 | E068 | -547 |
chr3 | 133465195 | 133465439 | E068 | -260 |
chr3 | 133465691 | 133465761 | E068 | 0 |
chr3 | 133468272 | 133468322 | E068 | 2573 |
chr3 | 133464975 | 133465152 | E069 | -547 |
chr3 | 133465195 | 133465439 | E069 | -260 |
chr3 | 133465691 | 133465761 | E069 | 0 |
chr3 | 133468272 | 133468322 | E069 | 2573 |
chr3 | 133465195 | 133465439 | E070 | -260 |
chr3 | 133464975 | 133465152 | E071 | -547 |
chr3 | 133465195 | 133465439 | E071 | -260 |
chr3 | 133465691 | 133465761 | E071 | 0 |
chr3 | 133468272 | 133468322 | E071 | 2573 |
chr3 | 133464975 | 133465152 | E072 | -547 |
chr3 | 133465195 | 133465439 | E072 | -260 |
chr3 | 133465691 | 133465761 | E072 | 0 |
chr3 | 133468272 | 133468322 | E072 | 2573 |
chr3 | 133464975 | 133465152 | E073 | -547 |
chr3 | 133465195 | 133465439 | E073 | -260 |
chr3 | 133465691 | 133465761 | E073 | 0 |
chr3 | 133468272 | 133468322 | E073 | 2573 |
chr3 | 133464975 | 133465152 | E074 | -547 |
chr3 | 133465195 | 133465439 | E074 | -260 |
chr3 | 133465691 | 133465761 | E074 | 0 |
chr3 | 133468272 | 133468322 | E074 | 2573 |
chr3 | 133464975 | 133465152 | E081 | -547 |
chr3 | 133464975 | 133465152 | E082 | -547 |
chr3 | 133465195 | 133465439 | E082 | -260 |