| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 4 | NC_000004.12:g.11131521A>G |
| GRCh37.p13 chr 4 | NC_000004.11:g.11133145A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.973 | G=0.027 |
| 1000Genomes | American | Sub | 694 | A=0.940 | G=0.060 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.999 | G=0.001 |
| 1000Genomes | Europe | Sub | 1006 | A=0.917 | G=0.083 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.958 | G=0.042 |
| 1000Genomes | South Asian | Sub | 978 | A=0.950 | G=0.050 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.924 | G=0.076 |
| The Genome Aggregation Database | African | Sub | 8732 | A=0.960 | G=0.040 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.950 | G=0.050 |
| The Genome Aggregation Database | East Asian | Sub | 1604 | A=0.999 | G=0.001 |
| The Genome Aggregation Database | Europe | Sub | 18482 | A=0.914 | G=0.085 |
| The Genome Aggregation Database | Global | Study-wide | 29958 | A=0.933 | G=0.066 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.930 | G=0.070 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.948 | G=0.052 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.920 | G=0.080 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20158304 | A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations. | Lind PA | Twin Res Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs4697674 | 6.85E-05 | alcohol and nictotine co-dependence | 20158304 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr4 | 11107928 | 11108104 | E081 | -25041 |
| chr4 | 11108507 | 11108631 | E081 | -24514 |
| chr4 | 11113549 | 11113772 | E081 | -19373 |
| chr4 | 11156563 | 11156662 | E081 | 23418 |
| chr4 | 11156844 | 11157168 | E081 | 23699 |
| chr4 | 11157224 | 11157518 | E081 | 24079 |
| chr4 | 11107928 | 11108104 | E082 | -25041 |
| chr4 | 11108507 | 11108631 | E082 | -24514 |
| chr4 | 11113549 | 11113772 | E082 | -19373 |
| chr4 | 11157224 | 11157518 | E082 | 24079 |
| chr4 | 11157530 | 11157957 | E082 | 24385 |