rs4738159

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0248 (7444/29912,GnomAD)
T=0213 (6205/29118,TOPMED)
T=0305 (1528/5008,1000G)
T=0284 (1094/3854,ALSPAC)
T=0294 (1091/3708,TWINSUK)
chr8:71772166 (GRCh38.p7) (8q13.3)
AD
GWASdb2
1   publication(s)
See rs on genome
16 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.71772166C>T
GRCh37.p13 chr 8NC_000008.10:g.72684401C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.929T=0.071
1000GenomesAmericanSub694C=0.700T=0.300
1000GenomesEast AsianSub1008C=0.420T=0.580
1000GenomesEuropeSub1006C=0.722T=0.278
1000GenomesGlobalStudy-wide5008C=0.695T=0.305
1000GenomesSouth AsianSub978C=0.630T=0.370
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.716T=0.284
The Genome Aggregation DatabaseAfricanSub8720C=0.904T=0.096
The Genome Aggregation DatabaseAmericanSub836C=0.660T=0.340
The Genome Aggregation DatabaseEast AsianSub1612C=0.427T=0.573
The Genome Aggregation DatabaseEuropeSub18442C=0.711T=0.288
The Genome Aggregation DatabaseGlobalStudy-wide29912C=0.751T=0.248
The Genome Aggregation DatabaseOtherSub302C=0.750T=0.250
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.786T=0.213
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.706T=0.294
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs47381590.000638alcohol dependence21314694

eQTL of rs4738159 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4738159 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr87272300872723499E06838607
chr87272357172723746E06839170
chr87263933372639496E070-44905
chr87263961272639680E070-44721
chr87263975172639839E070-44562
chr87263993972639989E070-44412
chr87264004172640091E070-44310
chr87264013172640245E070-44156
chr87272235272722777E07037951
chr87272454972724639E07040148
chr87272464972724747E07040248
chr87272478872724868E07040387
chr87272357172723746E07139170
chr87272235272722777E08237951
chr87272357172723746E08239170
chr87272402072724228E08239619