rs4740817

Homo sapiens
C>T
KANK1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0241 (7217/29934,GnomAD)
T=0251 (7319/29118,TOPMED)
T=0252 (1260/5008,1000G)
T=0234 (903/3854,ALSPAC)
T=0230 (853/3708,TWINSUK)
chr9:561143 (GRCh38.p7) (9p24.3)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.561143C>T
GRCh37.p13 chr 9NC_000009.11:g.561143C>T
KANK1 RefSeqGeneNG_016331.2:g.95850C>T

Gene: KANK1, KN motif and ankyrin repeat domains 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
KANK1 transcript variant 3NM_001256876.1:c.N/AIntron Variant
KANK1 transcript variant 4NM_001256877.1:c.N/AIntron Variant
KANK1 transcript variant 1NM_015158.3:c.N/AIntron Variant
KANK1 transcript variant 2NM_153186.4:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X2XM_005251411.2:c.N/AIntron Variant
KANK1 transcript variant X5XM_011517819.1:c.N/AIntron Variant
KANK1 transcript variant X6XM_011517820.1:c.N/AIntron Variant
KANK1 transcript variant X1XM_017014511.1:c.N/AIntron Variant
KANK1 transcript variant X4XM_017014513.1:c.N/AIntron Variant
KANK1 transcript variant X10XM_017014515.1:c.N/AIntron Variant
KANK1 transcript variant X13XM_017014518.1:c.N/AIntron Variant
KANK1 transcript variant X15XM_017014520.1:c.N/AIntron Variant
KANK1 transcript variant X17XM_017014522.1:c.N/AIntron Variant
KANK1 transcript variant X18XM_017014523.1:c.N/AIntron Variant
KANK1 transcript variant X29XM_017014528.1:c.N/AIntron Variant
KANK1 transcript variant X24XM_005251414.3:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X22XM_005251415.2:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X26XM_005251416.2:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X23XM_005251417.3:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X25XM_005251418.2:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X27XM_005251419.2:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X8XM_006716743.2:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X7XM_011517821.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X3XM_017014512.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X9XM_017014514.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X11XM_017014516.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X12XM_017014517.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X14XM_017014519.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X16XM_017014521.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X19XM_017014524.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X20XM_017014525.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X21XM_017014526.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X28XM_017014527.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X30XM_017014529.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X31XM_017014530.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X32XM_017014531.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X33XM_017014532.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X34XM_017014533.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X35XM_017014534.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X36XM_017014535.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X37XM_017014536.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X38XM_017014537.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X39XM_017014538.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X41XM_017014539.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X42XM_017014540.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X43XM_017014541.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X44XM_017014542.1:c.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X40XR_001746257.1:n.N/AGenic Upstream Transcript Variant
KANK1 transcript variant X45XR_001746258.1:n.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.747T=0.253
1000GenomesAmericanSub694C=0.610T=0.390
1000GenomesEast AsianSub1008C=0.737T=0.263
1000GenomesEuropeSub1006C=0.776T=0.224
1000GenomesGlobalStudy-wide5008C=0.748T=0.252
1000GenomesSouth AsianSub978C=0.830T=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.766T=0.234
The Genome Aggregation DatabaseAfricanSub8710C=0.730T=0.270
The Genome Aggregation DatabaseAmericanSub836C=0.570T=0.430
The Genome Aggregation DatabaseEast AsianSub1610C=0.761T=0.239
The Genome Aggregation DatabaseEuropeSub18476C=0.780T=0.219
The Genome Aggregation DatabaseGlobalStudy-wide29934C=0.758T=0.241
The Genome Aggregation DatabaseOtherSub302C=0.800T=0.200
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.748T=0.251
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.770T=0.230
PMID Title Author Journal
22377092ANAPC1 and SLCO3A1 are associated with nicotine dependence: meta-analysis of genome-wide association studies.Wang KSDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs47408176.51E-07nicotine dependence (smoking)22377092

eQTL of rs4740817 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4740817 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9513289513339E067-47804
chr9531455531647E067-29496
chr9531769531905E067-29238
chr9531935532183E067-28960
chr9532466532799E067-28344
chr9532810533139E067-28004
chr9533317533523E067-27620
chr9533684533874E067-27269
chr9533985534531E067-26612
chr9534669534943E067-26200
chr9534972535361E067-25782
chr9535463535734E067-25409
chr9535743535849E067-25294
chr9537040537411E067-23732
chr9537498537586E067-23557
chr9537646537700E067-23443
chr9537748537933E067-23210
chr9538059538151E067-22992
chr9538240538389E067-22754
chr9544406544559E067-16584
chr9544637544773E067-16370
chr9544890545079E067-16064
chr9545245545352E067-15791
chr9545536545720E067-15423
chr9545724545829E067-15314
chr9546262547628E067-13515
chr9547741547856E067-13287
chr9547891548104E067-13039
chr9548193548243E067-12900
chr9549261549344E067-11799
chr9558445558593E067-2550
chr9560046560243E067-900
chr9560348560446E067-697
chr9560500560550E067-593
chr9560701560789E067-354
chr9560845561205E0670
chr9561468561924E067325
chr9562439562642E0671296
chr9562912563844E0671769
chr9563874564064E0672731
chr9569032570658E0677889
chr9570713570786E0679570
chr9570925570999E0679782
chr9571096571215E0679953
chr9571221571532E06710078
chr9571582572115E06710439
chr9572958573162E06711815
chr9573583574603E06712440
chr9589168589389E06728025
chr9589520589584E06728377
chr9589600590159E06728457
chr9590160590507E06729017
chr9591279591734E06730136
chr9591999592597E06730856
chr9596434596484E06735291
chr9512982513130E068-48013
chr9513289513339E068-47804
chr9516802516929E068-44214
chr9517302517532E068-43611
chr9517540517606E068-43537
chr9518043518514E068-42629
chr9518590518863E068-42280
chr9519208519255E068-41888
chr9522347522756E068-38387
chr9522777522925E068-38218
chr9523233523540E068-37603
chr9523606523708E068-37435
chr9524123524262E068-36881
chr9524274524366E068-36777
chr9524426524494E068-36649
chr9524679524729E068-36414
chr9531088531237E068-29906
chr9531312531362E068-29781
chr9531455531647E068-29496
chr9531769531905E068-29238
chr9531935532183E068-28960
chr9532466532799E068-28344
chr9532810533139E068-28004
chr9533317533523E068-27620
chr9533684533874E068-27269
chr9533985534531E068-26612
chr9534669534943E068-26200
chr9534972535361E068-25782
chr9535463535734E068-25409
chr9535743535849E068-25294
chr9536038536078E068-25065
chr9536407536466E068-24677
chr9536679536748E068-24395
chr9536786536914E068-24229
chr9536921537020E068-24123
chr9537040537411E068-23732
chr9537498537586E068-23557
chr9537646537700E068-23443
chr9537748537933E068-23210
chr9544239544289E068-16854
chr9544406544559E068-16584
chr9544637544773E068-16370
chr9544890545079E068-16064
chr9545245545352E068-15791
chr9545536545720E068-15423
chr9545724545829E068-15314
chr9547891548104E068-13039
chr9548193548243E068-12900
chr9548384548463E068-12680
chr9552035552935E068-8208
chr9560845561205E0680
chr9561468561924E068325
chr9562439562642E0681296
chr9564319564395E0683176
chr9564787564837E0683644
chr9570713570786E0689570
chr9570925570999E0689782
chr9571096571215E0689953
chr9571221571532E06810078
chr9571582572115E06810439
chr9573583574603E06812440
chr9574613574653E06813470
chr9574754574818E06813611
chr9579663579718E06818520
chr9589168589389E06828025
chr9589520589584E06828377
chr9589600590159E06828457
chr9590160590507E06829017
chr9590828590904E06829685
chr9590966591151E06829823
chr9591279591734E06830136
chr9591999592597E06830856
chr9608530608829E06847387
chr9608920609108E06847777
chr9512982513130E069-48013
chr9513289513339E069-47804
chr9522777522925E069-38218
chr9523233523540E069-37603
chr9530500530657E069-30486
chr9530714530987E069-30156
chr9531088531237E069-29906
chr9531312531362E069-29781
chr9531455531647E069-29496
chr9531769531905E069-29238
chr9531935532183E069-28960
chr9532466532799E069-28344
chr9532810533139E069-28004
chr9533317533523E069-27620
chr9533684533874E069-27269
chr9533985534531E069-26612
chr9534669534943E069-26200
chr9534972535361E069-25782
chr9535743535849E069-25294
chr9536921537020E069-24123
chr9537040537411E069-23732
chr9537498537586E069-23557
chr9537646537700E069-23443
chr9537748537933E069-23210
chr9538059538151E069-22992
chr9538240538389E069-22754
chr9544239544289E069-16854
chr9544406544559E069-16584
chr9544637544773E069-16370
chr9544890545079E069-16064
chr9545245545352E069-15791
chr9545536545720E069-15423
chr9545724545829E069-15314
chr9546262547628E069-13515
chr9547741547856E069-13287
chr9547891548104E069-13039
chr9548193548243E069-12900
chr9549261549344E069-11799
chr9549370550149E069-10994
chr9552035552935E069-8208
chr9560348560446E069-697
chr9560500560550E069-593
chr9560701560789E069-354
chr9560845561205E0690
chr9561468561924E069325
chr9562439562642E0691296
chr9562912563844E0691769
chr9563874564064E0692731
chr9564319564395E0693176
chr9564787564837E0693644
chr9564856564906E0693713
chr9564910564998E0693767
chr9567283567458E0696140
chr9567464567885E0696321
chr9569032570658E0697889
chr9570713570786E0699570
chr9570925570999E0699782
chr9571096571215E0699953
chr9571221571532E06910078
chr9571582572115E06910439
chr9573583574603E06912440
chr9588968589039E06927825
chr9589168589389E06928025
chr9589520589584E06928377
chr9589600590159E06928457
chr9590160590507E06929017
chr9590828590904E06929685
chr9590966591151E06929823
chr9591279591734E06930136
chr9596434596484E06935291
chr9608530608829E06947387
chr9608920609108E06947777
chr9610709610872E06949566
chr9610900610999E06949757
chr9534972535361E070-25782
chr9512033512153E071-48990
chr9512320512364E071-48779
chr9512982513130E071-48013
chr9513289513339E071-47804
chr9516612516696E071-44447
chr9516802516929E071-44214
chr9517302517532E071-43611
chr9517540517606E071-43537
chr9520769520824E071-40319
chr9520915520965E071-40178
chr9522347522756E071-38387
chr9522777522925E071-38218
chr9523233523540E071-37603
chr9523606523708E071-37435
chr9524679524729E071-36414
chr9530500530657E071-30486
chr9530714530987E071-30156
chr9531088531237E071-29906
chr9531312531362E071-29781
chr9531455531647E071-29496
chr9531769531905E071-29238
chr9531935532183E071-28960
chr9532466532799E071-28344
chr9532810533139E071-28004
chr9533317533523E071-27620
chr9533684533874E071-27269
chr9533985534531E071-26612
chr9535463535734E071-25409
chr9535743535849E071-25294
chr9536038536078E071-25065
chr9536679536748E071-24395
chr9536786536914E071-24229
chr9536921537020E071-24123
chr9537040537411E071-23732
chr9537498537586E071-23557
chr9537646537700E071-23443
chr9537748537933E071-23210
chr9538059538151E071-22992
chr9538240538389E071-22754
chr9544239544289E071-16854
chr9544406544559E071-16584
chr9544637544773E071-16370
chr9544890545079E071-16064
chr9545245545352E071-15791
chr9545536545720E071-15423
chr9545724545829E071-15314
chr9549261549344E071-11799
chr9549370550149E071-10994
chr9551166551357E071-9786
chr9551636551714E071-9429
chr9552035552935E071-8208
chr9553489553539E071-7604
chr9557794558197E071-2946
chr9558445558593E071-2550
chr9559734560039E071-1104
chr9560046560243E071-900
chr9560348560446E071-697
chr9560500560550E071-593
chr9560701560789E071-354
chr9560845561205E0710
chr9561468561924E071325
chr9562439562642E0711296
chr9564787564837E0713644
chr9564856564906E0713713
chr9564910564998E0713767
chr9567283567458E0716140
chr9567464567885E0716321
chr9570713570786E0719570
chr9570925570999E0719782
chr9571096571215E0719953
chr9571221571532E07110078
chr9571582572115E07110439
chr9572190572355E07111047
chr9572408572499E07111265
chr9572634572717E07111491
chr9572958573162E07111815
chr9573583574603E07112440
chr9574613574653E07113470
chr9574754574818E07113611
chr9574933575460E07113790
chr9578859578948E07117716
chr9578963579071E07117820
chr9588763588891E07127620
chr9588968589039E07127825
chr9589168589389E07128025
chr9589520589584E07128377
chr9589600590159E07128457
chr9591279591734E07130136
chr9591999592597E07130856
chr9592742592795E07131599
chr9592890592970E07131747
chr9596434596484E07135291
chr9608530608829E07147387
chr9608920609108E07147777
chr9610633610683E07149490
chr9610709610872E07149566
chr9610900610999E07149757
chr9512033512153E072-48990
chr9512320512364E072-48779
chr9512982513130E072-48013
chr9513289513339E072-47804
chr9517302517532E072-43611
chr9520769520824E072-40319
chr9520915520965E072-40178
chr9521278521519E072-39624
chr9522777522925E072-38218
chr9523233523540E072-37603
chr9523606523708E072-37435
chr9524123524262E072-36881
chr9524274524366E072-36777
chr9524426524494E072-36649
chr9530714530987E072-30156
chr9531088531237E072-29906
chr9531312531362E072-29781
chr9531455531647E072-29496
chr9531769531905E072-29238
chr9531935532183E072-28960
chr9532466532799E072-28344
chr9532810533139E072-28004
chr9533317533523E072-27620
chr9533684533874E072-27269
chr9533985534531E072-26612
chr9534669534943E072-26200
chr9534972535361E072-25782
chr9535463535734E072-25409
chr9535743535849E072-25294
chr9537646537700E072-23443
chr9537748537933E072-23210
chr9538059538151E072-22992
chr9544890545079E072-16064
chr9545245545352E072-15791
chr9545536545720E072-15423
chr9545724545829E072-15314
chr9547891548104E072-13039
chr9549261549344E072-11799
chr9549370550149E072-10994
chr9552035552935E072-8208
chr9560845561205E0720
chr9561468561924E072325
chr9562439562642E0721296
chr9562912563844E0721769
chr9563874564064E0722731
chr9564319564395E0723176
chr9564787564837E0723644
chr9564856564906E0723713
chr9564910564998E0723767
chr9569032570658E0727889
chr9570713570786E0729570
chr9570925570999E0729782
chr9571096571215E0729953
chr9571221571532E07210078
chr9573583574603E07212440
chr9574933575460E07213790
chr9587598587704E07226455
chr9589168589389E07228025
chr9589520589584E07228377
chr9589600590159E07228457
chr9590160590507E07229017
chr9591279591734E07230136
chr9591999592597E07230856
chr9596434596484E07235291
chr9608530608829E07247387
chr9608920609108E07247777
chr9522347522756E073-38387
chr9522777522925E073-38218
chr9532810533139E073-28004
chr9533317533523E073-27620
chr9533684533874E073-27269
chr9534669534943E073-26200
chr9534972535361E073-25782
chr9535463535734E073-25409
chr9535743535849E073-25294
chr9536921537020E073-24123
chr9537040537411E073-23732
chr9544890545079E073-16064
chr9545245545352E073-15791
chr9545536545720E073-15423
chr9545724545829E073-15314
chr9546262547628E073-13515
chr9573583574603E07312440
chr9589600590159E07328457
chr9511249511305E074-49838
chr9512033512153E074-48990
chr9512320512364E074-48779
chr9512982513130E074-48013
chr9513289513339E074-47804
chr9521278521519E074-39624
chr9522347522756E074-38387
chr9522777522925E074-38218
chr9531088531237E074-29906
chr9531312531362E074-29781
chr9531455531647E074-29496
chr9531769531905E074-29238
chr9531935532183E074-28960
chr9532466532799E074-28344
chr9532810533139E074-28004
chr9533317533523E074-27620
chr9533684533874E074-27269
chr9533985534531E074-26612
chr9534669534943E074-26200
chr9534972535361E074-25782
chr9535463535734E074-25409
chr9535743535849E074-25294
chr9536407536466E074-24677
chr9536679536748E074-24395
chr9536786536914E074-24229
chr9536921537020E074-24123
chr9537040537411E074-23732
chr9537498537586E074-23557
chr9538240538389E074-22754
chr9544239544289E074-16854
chr9544406544559E074-16584
chr9544637544773E074-16370
chr9544890545079E074-16064
chr9545245545352E074-15791
chr9545536545720E074-15423
chr9545724545829E074-15314
chr9546262547628E074-13515
chr9547741547856E074-13287
chr9547891548104E074-13039
chr9548193548243E074-12900
chr9552035552935E074-8208
chr9562439562642E0741296
chr9569032570658E0747889
chr9570713570786E0749570
chr9570925570999E0749782
chr9571096571215E0749953
chr9571221571532E07410078
chr9572958573162E07411815
chr9573583574603E07412440
chr9588968589039E07427825
chr9589168589389E07428025
chr9589520589584E07428377
chr9589600590159E07428457
chr9590160590507E07429017
chr9591279591734E07430136
chr9591999592597E07430856
chr9596434596484E07435291
chr9529404529454E081-31689
chr9529589529642E081-31501
chr9546262547628E081-13515
chr9547741547856E081-13287
chr9552035552935E081-8208