rs4756329

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0392 (11735/29886,GnomAD)
A=0431 (12562/29118,TOPMED)
A=0440 (2206/5008,1000G)
A=0361 (1391/3854,ALSPAC)
A=0366 (1358/3708,TWINSUK)
chr11:32883548 (GRCh38.p7) (11p13)
AD
GWASdb2
1   publication(s)
See rs on genome
28 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.32883548T>A
GRCh37.p13 chr 11NC_000011.9:g.32905094T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.478A=0.522
1000GenomesAmericanSub694T=0.530A=0.470
1000GenomesEast AsianSub1008T=0.588A=0.412
1000GenomesEuropeSub1006T=0.635A=0.365
1000GenomesGlobalStudy-wide5008T=0.560A=0.440
1000GenomesSouth AsianSub978T=0.580A=0.420
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.639A=0.361
The Genome Aggregation DatabaseAfricanSub8696T=0.496A=0.504
The Genome Aggregation DatabaseAmericanSub836T=0.570A=0.430
The Genome Aggregation DatabaseEast AsianSub1602T=0.628A=0.372
The Genome Aggregation DatabaseEuropeSub18450T=0.659A=0.341
The Genome Aggregation DatabaseGlobalStudy-wide29886T=0.607A=0.392
The Genome Aggregation DatabaseOtherSub302T=0.650A=0.350
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.568A=0.431
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.634A=0.366
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs47563290.000333alcohol dependence21314694

eQTL of rs4756329 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr11:32905094HNRNPA3P9ENSG00000270903.1T>A1.2083e-6290777Cerebellar_Hemisphere

meQTL of rs4756329 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr113291657432917056E06711480
chr113291711232917331E06712018
chr113292122732921296E06716133
chr113292133432921422E06716240
chr113292155532921605E06716461
chr113287291332873063E068-32031
chr113291657432917056E06811480
chr113291711232917331E06812018
chr113291734432917412E06812250
chr113287291332873063E071-32031
chr113291657432917056E07111480
chr113291711232917331E07112018
chr113291734432917412E07112250
chr113292122732921296E07216133
chr113292133432921422E07216240
chr113292155532921605E07216461
chr113292085932920926E07315765
chr113287291332873063E074-32031
chr113291657432917056E07411480
chr113291711232917331E07412018
chr113291734432917412E07412250
chr113292085932920926E07415765
chr113292093732921021E07415843
chr113292122732921296E07416133
chr113292133432921422E07416240
chr113292155532921605E07416461
chr113291734432917412E08112250
chr113291852732918586E08113433







Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr113291248632916542E0677392
chr113291248632916542E0687392
chr113291248632916542E0697392
chr113291248632916542E0707392
chr113291248632916542E0717392
chr113291248632916542E0727392
chr113291248632916542E0737392
chr113291248632916542E0747392
chr113291248632916542E0817392
chr113291248632916542E0827392